[INFO] fetching crate flann-sys 0.1.0... [INFO] checking flann-sys-0.1.0 against try#894d32a5432c6a6461bb2aac7c3d5f2e87dce83f for pr-77015 [INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain 894d32a5432c6a6461bb2aac7c3d5f2e87dce83f [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+894d32a5432c6a6461bb2aac7c3d5f2e87dce83f" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann-sys 0.1.0 [INFO] finished tweaking crates.io crate flann-sys 0.1.0 [INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+894d32a5432c6a6461bb2aac7c3d5f2e87dce83f" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+894d32a5432c6a6461bb2aac7c3d5f2e87dce83f" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+894d32a5432c6a6461bb2aac7c3d5f2e87dce83f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 51f37f979608d3098112a3843029a0ff4637f96fda5692f4e960d326de0bd6bd [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "51f37f979608d3098112a3843029a0ff4637f96fda5692f4e960d326de0bd6bd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "51f37f979608d3098112a3843029a0ff4637f96fda5692f4e960d326de0bd6bd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "51f37f979608d3098112a3843029a0ff4637f96fda5692f4e960d326de0bd6bd", kill_on_drop: false }` [INFO] [stdout] 51f37f979608d3098112a3843029a0ff4637f96fda5692f4e960d326de0bd6bd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+894d32a5432c6a6461bb2aac7c3d5f2e87dce83f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fb4e6382c4aac49b6827ec610a70267a1a0ac1a22ccbfae6f2e8fbae494620a1 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "fb4e6382c4aac49b6827ec610a70267a1a0ac1a22ccbfae6f2e8fbae494620a1", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.78 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling flann-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-43e2fa6957913b79/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-292d8a58666abf1b/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-292d8a58666abf1b/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-292d8a58666abf1b/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x561f961abb30 - std::backtrace_rs::backtrace::libunwind::trace::he85dfb3ae4206056 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x561f961abb30 - std::backtrace_rs::backtrace::trace_unsynchronized::h1ad28094d7b00c21 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x561f961abb30 - std::sys_common::backtrace::_print_fmt::h901b54610713cd21 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x561f961abb30 - ::fmt::hb0ad78ee1571f7e0 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x561f961d166c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/core/src/fmt/mod.rs:1080 [INFO] [stderr] 5: 0x561f961a7f32 - std::io::Write::write_fmt::hf7b7d7b243f84a36 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/io/mod.rs:1516 [INFO] [stderr] 6: 0x561f961ae47d - std::sys_common::backtrace::_print::hd093978a5287b8ff [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x561f961ae47d - std::sys_common::backtrace::print::h20f46787581d56d7 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x561f961ae47d - std::panicking::default_hook::{{closure}}::h486cbb4b82ffc357 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/panicking.rs:208 [INFO] [stderr] 9: 0x561f961ae128 - std::panicking::default_hook::h4190c9e3edd4d591 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/panicking.rs:227 [INFO] [stderr] 10: 0x561f961aeb61 - std::panicking::rust_panic_with_hook::h72e78719cdda225c [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/panicking.rs:577 [INFO] [stderr] 11: 0x561f961ae709 - std::panicking::begin_panic_handler::{{closure}}::h8bd07dbd34150a96 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/panicking.rs:484 [INFO] [stderr] 12: 0x561f961abfbc - std::sys_common::backtrace::__rust_end_short_backtrace::hdb6b3066ad29028a [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x561f961ae6c9 - rust_begin_unwind [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/panicking.rs:483 [INFO] [stderr] 14: 0x561f961ae67b - std::panicking::begin_panic_fmt::hc19e75fd2b7bc39b [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/panicking.rs:437 [INFO] [stderr] 15: 0x561f95c6b5f4 - cmake::fail::h82f04173dab9b8d2 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885 [INFO] [stderr] 16: 0x561f95c6af51 - cmake::run::h63bd155e7be65a8f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863 [INFO] [stderr] 17: 0x561f95c66a2c - cmake::Config::build::hf30e7ccc8a324f43 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:698 [INFO] [stderr] 18: 0x561f95c61422 - build_script_build::main::h6b75d1b131a4cfa7 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:30 [INFO] [stderr] 19: 0x561f95c61f0b - core::ops::function::FnOnce::call_once::ha63839461fe76137 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/core/src/ops/function.rs:227 [INFO] [stderr] 20: 0x561f95c61d3e - std::sys_common::backtrace::__rust_begin_short_backtrace::hb3b2dd6bbbdd1f3b [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 21: 0x561f95c63b61 - std::rt::lang_start::{{closure}}::h91115728eeabdf24 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/rt.rs:66 [INFO] [stderr] 22: 0x561f961aef87 - core::ops::function::impls:: for &F>::call_once::h5e15f43ce28787f7 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/core/src/ops/function.rs:259 [INFO] [stderr] 23: 0x561f961aef87 - std::panicking::try::do_call::h764f1891769113e9 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/panicking.rs:381 [INFO] [stderr] 24: 0x561f961aef87 - std::panicking::try::h0f2fe4fdd5e0ad19 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/panicking.rs:345 [INFO] [stderr] 25: 0x561f961aef87 - std::panic::catch_unwind::h1634e40dd3a19f80 [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/panic.rs:382 [INFO] [stderr] 26: 0x561f961aef87 - std::rt::lang_start_internal::h8d4bc7b854bbd5fe [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/rt.rs:51 [INFO] [stderr] 27: 0x561f95c63b37 - std::rt::lang_start::h3d55603e57fdd89e [INFO] [stderr] at /rustc/894d32a5432c6a6461bb2aac7c3d5f2e87dce83f/library/std/src/rt.rs:65 [INFO] [stderr] 28: 0x561f95c6185a - main [INFO] [stderr] 29: 0x7f69c53720b3 - __libc_start_main [INFO] [stderr] 30: 0x561f95c610ce - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "fb4e6382c4aac49b6827ec610a70267a1a0ac1a22ccbfae6f2e8fbae494620a1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fb4e6382c4aac49b6827ec610a70267a1a0ac1a22ccbfae6f2e8fbae494620a1", kill_on_drop: false }` [INFO] [stdout] fb4e6382c4aac49b6827ec610a70267a1a0ac1a22ccbfae6f2e8fbae494620a1