[INFO] cloning repository https://github.com/informationsea/sequencetoolkit [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] f3273e476fe4ec0c5e74886ff10f6ca81ccd1266 [INFO] checking informationsea/sequencetoolkit against try#894d32a5432c6a6461bb2aac7c3d5f2e87dce83f for pr-77015 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-13/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-13/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain 894d32a5432c6a6461bb2aac7c3d5f2e87dce83f [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+894d32a5432c6a6461bb2aac7c3d5f2e87dce83f" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit [INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit [INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-13/source/Cargo.toml [INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+894d32a5432c6a6461bb2aac7c3d5f2e87dce83f" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded zstd v0.5.3+zstd.1.4.5 [INFO] [stderr] Downloaded brotli-decompressor v2.3.1 [INFO] [stderr] Downloaded zstd-safe v2.0.5+zstd.1.4.5 [INFO] [stderr] Downloaded statrs v0.12.0 [INFO] [stderr] Downloaded bio v0.30.1 [INFO] [stderr] Downloaded zstd-sys v1.4.17+zstd.1.4.5 [INFO] [stderr] Downloaded vcf v0.4.0 [INFO] [stderr] Downloaded autocompress v0.1.0 [INFO] [stderr] Downloaded bgzip v0.1.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+894d32a5432c6a6461bb2aac7c3d5f2e87dce83f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8c24100217520443962188dde84e2f623e414aa53f77407182a98d1c7cdb7754 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8c24100217520443962188dde84e2f623e414aa53f77407182a98d1c7cdb7754", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8c24100217520443962188dde84e2f623e414aa53f77407182a98d1c7cdb7754", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8c24100217520443962188dde84e2f623e414aa53f77407182a98d1c7cdb7754", kill_on_drop: false }` [INFO] [stdout] 8c24100217520443962188dde84e2f623e414aa53f77407182a98d1c7cdb7754 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+894d32a5432c6a6461bb2aac7c3d5f2e87dce83f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 45d55d99f099cbed9914134763976ee019a6b9ba6718b258f74b824070a83dac [INFO] running `Command { std: "docker" "start" "-a" "45d55d99f099cbed9914134763976ee019a6b9ba6718b258f74b824070a83dac", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.21 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling bindgen v0.53.3 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Checking gimli v0.22.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking object v0.20.0 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Checking arrayvec v0.5.1 [INFO] [stderr] Compiling snap v1.0.1 [INFO] [stderr] Checking ordermap v0.3.5 [INFO] [stderr] Compiling bio v0.30.1 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking bytecount v0.6.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking fnv v1.0.7 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling miniz_oxide v0.4.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Checking humantime v1.3.0 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling clang-sys v0.29.3 [INFO] [stderr] Checking petgraph v0.4.13 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking crc32fast v1.2.0 [INFO] [stderr] Checking brotli-decompressor v2.3.1 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking aho-corasick v0.7.13 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Compiling lexical-core v0.7.4 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Compiling cc v1.0.60 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking flate2 v1.0.17 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking regex v1.3.9 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking ordered-float v1.1.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking brotli v3.3.0 [INFO] [stderr] Checking addr2line v0.13.0 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling zstd-sys v1.4.17+zstd.1.4.5 [INFO] [stderr] Compiling lz4-sys v1.9.2 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Checking statrs v0.12.0 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Checking backtrace v0.3.50 [INFO] [stderr] Checking pretty_env_logger v0.4.0 [INFO] [stderr] Checking xz2 v0.1.6 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] error: could not compile `clang-sys` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `rustc --crate-name clang_sys /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/clang-sys-0.29.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="clang_6_0"' --cfg 'feature="gte_clang_3_6"' --cfg 'feature="gte_clang_3_7"' --cfg 'feature="gte_clang_3_8"' --cfg 'feature="gte_clang_3_9"' --cfg 'feature="gte_clang_4_0"' --cfg 'feature="gte_clang_5_0"' --cfg 'feature="gte_clang_6_0"' --cfg 'feature="libloading"' --cfg 'feature="runtime"' -C metadata=37c254a2d3bb8e46 -C extra-filename=-37c254a2d3bb8e46 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern glob=/opt/rustwide/target/debug/deps/libglob-22257a5316e5ea03.rmeta --extern libc=/opt/rustwide/target/debug/deps/liblibc-63b798c30cb12d16.rmeta --extern libloading=/opt/rustwide/target/debug/deps/liblibloading-0a2a17f5caad08ff.rmeta --cap-lints allow --cap-lints=forbid -L native=/opt/rustwide/target/debug/build/libloading-4b4488d7b89b4fca/out` (signal: 9, SIGKILL: kill) [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "45d55d99f099cbed9914134763976ee019a6b9ba6718b258f74b824070a83dac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "45d55d99f099cbed9914134763976ee019a6b9ba6718b258f74b824070a83dac", kill_on_drop: false }` [INFO] [stdout] 45d55d99f099cbed9914134763976ee019a6b9ba6718b258f74b824070a83dac