[INFO] fetching crate rnafamprob 0.1.0...
[INFO] checking rnafamprob-0.1.0 against master#d62d3f7fa9a91d933213cc10e20e740608983f64 for pr-77015
[INFO] extracting crate rnafamprob 0.1.0 into /workspace/builds/worker-12/source
[INFO] validating manifest of crates.io crate rnafamprob 0.1.0 on toolchain d62d3f7fa9a91d933213cc10e20e740608983f64
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d62d3f7fa9a91d933213cc10e20e740608983f64" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate rnafamprob 0.1.0
[INFO] finished tweaking crates.io crate rnafamprob 0.1.0
[INFO] tweaked toml for crates.io crate rnafamprob 0.1.0 written to /workspace/builds/worker-12/source/Cargo.toml
[INFO] crate crates.io crate rnafamprob 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d62d3f7fa9a91d933213cc10e20e740608983f64" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+d62d3f7fa9a91d933213cc10e20e740608983f64" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] cd8deda5b7574b7ed9a6522fa42a79658d9aafb9bf4f6554f8ffb80ddc6e2fd2
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "cd8deda5b7574b7ed9a6522fa42a79658d9aafb9bf4f6554f8ffb80ddc6e2fd2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "cd8deda5b7574b7ed9a6522fa42a79658d9aafb9bf4f6554f8ffb80ddc6e2fd2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cd8deda5b7574b7ed9a6522fa42a79658d9aafb9bf4f6554f8ffb80ddc6e2fd2", kill_on_drop: false }`
[INFO] [stdout] cd8deda5b7574b7ed9a6522fa42a79658d9aafb9bf4f6554f8ffb80ddc6e2fd2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+d62d3f7fa9a91d933213cc10e20e740608983f64" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 320ecdaf254413e28bc82e269d895b4fadd61aeabd9a5dd045811fd9d0f5f3a9
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "320ecdaf254413e28bc82e269d895b4fadd61aeabd9a5dd045811fd9d0f5f3a9", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v0.1.7
[INFO] [stderr]    Compiling libc v0.2.65
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling serde v1.0.101
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]     Checking fnv v1.0.6
[INFO] [stderr]     Checking lazy_static v0.1.16
[INFO] [stderr]     Checking unicode-width v0.1.6
[INFO] [stderr]     Checking quick-error v1.2.2
[INFO] [stderr]     Checking bytecount v0.3.2
[INFO] [stderr]     Checking itertools v0.6.5
[INFO] [stderr]     Checking unreachable v1.0.0
[INFO] [stderr]     Checking itertools v0.7.11
[INFO] [stderr]    Compiling proc-macro2 v1.0.6
[INFO] [stderr]     Checking thread_local v0.3.6
[INFO] [stderr]     Checking regex-automata v0.1.8
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking getopts v0.2.21
[INFO] [stderr]     Checking bio-seq-algos v0.1.12
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking rna-ss-params v0.1.13
[INFO] [stderr]    Compiling num-traits v0.2.8
[INFO] [stderr]    Compiling num-integer v0.1.41
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling syn v1.0.5
[INFO] [stderr]     Checking num_cpus v1.10.1
[INFO] [stderr]     Checking time v0.1.42
[INFO] [stderr]     Checking csv-core v0.1.6
[INFO] [stderr]     Checking aho-corasick v0.6.10
[INFO] [stderr]     Checking regex v0.2.11
[INFO] [stderr]     Checking num-traits v0.1.43
[INFO] [stderr]     Checking num-complex v0.1.43
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v0.5.2
[INFO] [stderr]    Compiling serde_derive v1.0.101
[INFO] [stderr]     Checking bstr v0.2.8
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking csv v1.1.1
[INFO] [stderr]     Checking bio v0.20.3
[INFO] [stderr]     Checking rna-algos v0.1.10
[INFO] [stderr]     Checking rnafamprob v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unnecessary trailing semicolon
[INFO] [stdout]     --> src/lib.rs:1279:152
[INFO] [stdout]      |
[INFO] [stdout] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;;
[INFO] [stdout]      |                                                        ^ help: remove this semicolon
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary trailing semicolon
[INFO] [stdout]     --> src/lib.rs:1279:152
[INFO] [stdout]      |
[INFO] [stdout] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;;
[INFO] [stdout]      |                                                        ^ help: remove this semicolon
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/utils.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / lazy_static! {
[INFO] [stdout] 27 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stdout] 28 | |     [
[INFO] [stdout] 29 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stdout] ...  |
[INFO] [stdout] 44 | |   };
[INFO] [stdout] 45 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/utils.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / lazy_static! {
[INFO] [stdout] 27 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stdout] 28 | |     [
[INFO] [stdout] 29 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stdout] ...  |
[INFO] [stdout] 44 | |   };
[INFO] [stdout] 45 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/utils.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / lazy_static! {
[INFO] [stdout] 27 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stdout] 28 | |     [
[INFO] [stdout] 29 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stdout] ...  |
[INFO] [stdout] 44 | |   };
[INFO] [stdout] 45 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/utils.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / lazy_static! {
[INFO] [stdout] 27 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stdout] 28 | |     [
[INFO] [stdout] 29 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stdout] ...  |
[INFO] [stdout] 44 | |   };
[INFO] [stdout] 45 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/utils.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / lazy_static! {
[INFO] [stdout] 27 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stdout] 28 | |     [
[INFO] [stdout] 29 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stdout] ...  |
[INFO] [stdout] 44 | |   };
[INFO] [stdout] 45 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/utils.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / lazy_static! {
[INFO] [stdout] 27 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stdout] 28 | |     [
[INFO] [stdout] 29 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stdout] ...  |
[INFO] [stdout] 44 | |   };
[INFO] [stdout] 45 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/utils.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / lazy_static! {
[INFO] [stdout] 27 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stdout] 28 | |     [
[INFO] [stdout] 29 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stdout] ...  |
[INFO] [stdout] 44 | |   };
[INFO] [stdout] 45 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/utils.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / lazy_static! {
[INFO] [stdout] 27 | |   pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = {
[INFO] [stdout] 28 | |     [
[INFO] [stdout] 29 | |       (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39),
[INFO] [stdout] ...  |
[INFO] [stdout] 44 | |   };
[INFO] [stdout] 45 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 5 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 5 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 54.31s
[INFO] running `Command { std: "docker" "inspect" "320ecdaf254413e28bc82e269d895b4fadd61aeabd9a5dd045811fd9d0f5f3a9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "320ecdaf254413e28bc82e269d895b4fadd61aeabd9a5dd045811fd9d0f5f3a9", kill_on_drop: false }`
[INFO] [stdout] 320ecdaf254413e28bc82e269d895b4fadd61aeabd9a5dd045811fd9d0f5f3a9