[INFO] cloning repository https://github.com/oicr-gsi/barcodex-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/oicr-gsi/barcodex-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Foicr-gsi%2Fbarcodex-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Foicr-gsi%2Fbarcodex-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 192d1d201dd44715945965621224021ec55e1c43
[INFO] checking oicr-gsi/barcodex-rs against master#d62d3f7fa9a91d933213cc10e20e740608983f64 for pr-77015
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Foicr-gsi%2Fbarcodex-rs" "/workspace/builds/worker-9/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/oicr-gsi/barcodex-rs on toolchain d62d3f7fa9a91d933213cc10e20e740608983f64
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d62d3f7fa9a91d933213cc10e20e740608983f64" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/oicr-gsi/barcodex-rs
[INFO] finished tweaking git repo https://github.com/oicr-gsi/barcodex-rs
[INFO] tweaked toml for git repo https://github.com/oicr-gsi/barcodex-rs written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] crate git repo https://github.com/oicr-gsi/barcodex-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d62d3f7fa9a91d933213cc10e20e740608983f64" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr] error: the lock file /workspace/builds/worker-9/source/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag.
[INFO] the lockfile is outdated, regenerating it
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d62d3f7fa9a91d933213cc10e20e740608983f64" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d62d3f7fa9a91d933213cc10e20e740608983f64" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+d62d3f7fa9a91d933213cc10e20e740608983f64" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 3e1f00a24b3a9a5516f4fe0bc68ea2ae59e09b9d891c5aea422796e8c82dd8c7
[INFO] running `Command { std: "docker" "start" "-a" "3e1f00a24b3a9a5516f4fe0bc68ea2ae59e09b9d891c5aea422796e8c82dd8c7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3e1f00a24b3a9a5516f4fe0bc68ea2ae59e09b9d891c5aea422796e8c82dd8c7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3e1f00a24b3a9a5516f4fe0bc68ea2ae59e09b9d891c5aea422796e8c82dd8c7", kill_on_drop: false }`
[INFO] [stdout] 3e1f00a24b3a9a5516f4fe0bc68ea2ae59e09b9d891c5aea422796e8c82dd8c7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+d62d3f7fa9a91d933213cc10e20e740608983f64" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 330608048dc65c8cfdde5a28c955ca1bc025b7ec1124680f60b0a3a16670d4f9
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "330608048dc65c8cfdde5a28c955ca1bc025b7ec1124680f60b0a3a16670d4f9", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling serde_derive v1.0.116
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling serde_json v1.0.58
[INFO] [stderr]    Compiling bio v0.31.0
[INFO] [stderr]     Checking bit-vec v0.6.2
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling miniz_oxide v0.4.2
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking getrandom v0.1.15
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]     Checking indexmap v1.6.0
[INFO] [stderr]     Checking ordered-float v1.1.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking flate2 v1.0.18
[INFO] [stderr]     Checking ndarray v0.13.1
[INFO] [stderr]    Compiling syn v1.0.42
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.2
[INFO] [stderr]     Checking snafu v0.6.9
[INFO] [stderr]     Checking serde v1.0.116
[INFO] [stderr]     Checking bstr v0.2.13
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking clap v3.0.0-beta.2
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking barcodex-rs v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 36s
[INFO] running `Command { std: "docker" "inspect" "330608048dc65c8cfdde5a28c955ca1bc025b7ec1124680f60b0a3a16670d4f9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "330608048dc65c8cfdde5a28c955ca1bc025b7ec1124680f60b0a3a16670d4f9", kill_on_drop: false }`
[INFO] [stdout] 330608048dc65c8cfdde5a28c955ca1bc025b7ec1124680f60b0a3a16670d4f9