[INFO] fetching crate openmm-sys 7.4.1... [INFO] checking openmm-sys-7.4.1 against try#05c8870159e4f328578a970e125aa76d24f03b56 for pr-76219 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-11/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 05c8870159e4f328578a970e125aa76d24f03b56 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+05c8870159e4f328578a970e125aa76d24f03b56" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-11/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+05c8870159e4f328578a970e125aa76d24f03b56" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+05c8870159e4f328578a970e125aa76d24f03b56" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 35633b6ff86da8aea17c2c57e3df56effd78b1b51c5153d4f020a3c040592b2a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "35633b6ff86da8aea17c2c57e3df56effd78b1b51c5153d4f020a3c040592b2a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "35633b6ff86da8aea17c2c57e3df56effd78b1b51c5153d4f020a3c040592b2a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "35633b6ff86da8aea17c2c57e3df56effd78b1b51c5153d4f020a3c040592b2a", kill_on_drop: false }` [INFO] [stdout] 35633b6ff86da8aea17c2c57e3df56effd78b1b51c5153d4f020a3c040592b2a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+05c8870159e4f328578a970e125aa76d24f03b56" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a63cb5e48c14b34365bb0a2f06f9dc0f98262168bc70587fb53b08237e8fcb5f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a63cb5e48c14b34365bb0a2f06f9dc0f98262168bc70587fb53b08237e8fcb5f", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-7847ba32c30c918c/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-35f74256ee8afbdf/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-35f74256ee8afbdf/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x558137809cf0 - std::backtrace_rs::backtrace::libunwind::trace::h452faf99f32e7c93 [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x558137809cf0 - std::backtrace_rs::backtrace::trace_unsynchronized::he40edc71437667a1 [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x558137809cf0 - std::sys_common::backtrace::_print_fmt::h6c51d6ade71f46bf [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x558137809cf0 - ::fmt::h3cd15d7003dec37a [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x5581378299cc - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/core/src/fmt/mod.rs:1082 [INFO] [stderr] 5: 0x558137806687 - std::io::Write::write_fmt::hac61caff894c35ae [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/io/mod.rs:1517 [INFO] [stderr] 6: 0x55813780c4b0 - std::sys_common::backtrace::_print::haa2f390fb7957e3e [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x55813780c4b0 - std::sys_common::backtrace::print::h48c7cbbad9013bb1 [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x55813780c4b0 - std::panicking::default_hook::{{closure}}::h8b7ff05a31e71d55 [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/panicking.rs:208 [INFO] [stderr] 9: 0x55813780c1fc - std::panicking::default_hook::h2f00c78800d98e4c [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/panicking.rs:227 [INFO] [stderr] 10: 0x55813780cb13 - std::panicking::rust_panic_with_hook::h4eaa635e4694aef3 [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/panicking.rs:577 [INFO] [stderr] 11: 0x55813780c6e9 - std::panicking::begin_panic_handler::{{closure}}::hec242f1b136b5ff2 [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/panicking.rs:484 [INFO] [stderr] 12: 0x55813780a15c - std::sys_common::backtrace::__rust_end_short_backtrace::h1f3cc383ee6c0374 [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x55813780c6a9 - rust_begin_unwind [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/panicking.rs:483 [INFO] [stderr] 14: 0x55813780c65b - std::panicking::begin_panic_fmt::hebfdcd945bbd27b1 [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/panicking.rs:437 [INFO] [stderr] 15: 0x55813779e8a7 - cmake::fail::h1926688173feff39 [INFO] [stderr] 16: 0x55813779e206 - cmake::run::h6fa6bd5826ca7e4a [INFO] [stderr] 17: 0x558137799efc - cmake::Config::build::h5a94162c81b8d736 [INFO] [stderr] 18: 0x5581377949c8 - build_script_build::main::hed4318c25ec1ef66 [INFO] [stderr] 19: 0x558137796be3 - core::ops::function::FnOnce::call_once::h7c3bacc344dc9080 [INFO] [stderr] 20: 0x5581377968e9 - std::sys_common::backtrace::__rust_begin_short_backtrace::h3f78d9ca57812830 [INFO] [stderr] 21: 0x558137795569 - std::rt::lang_start::{{closure}}::haaeb53c37cfab26a [INFO] [stderr] 22: 0x55813780cf11 - core::ops::function::impls:: for &F>::call_once::hecc21eb9018cc197 [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/core/src/ops/function.rs:259 [INFO] [stderr] 23: 0x55813780cf11 - std::panicking::try::do_call::h174ad655d084b5c7 [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/panicking.rs:381 [INFO] [stderr] 24: 0x55813780cf11 - std::panicking::try::h479e6054ce28de10 [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/panicking.rs:345 [INFO] [stderr] 25: 0x55813780cf11 - std::panic::catch_unwind::hb558ddea2b3e9c45 [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/panic.rs:382 [INFO] [stderr] 26: 0x55813780cf11 - std::rt::lang_start_internal::h163149047f0a8b61 [INFO] [stderr] at /rustc/05c8870159e4f328578a970e125aa76d24f03b56/library/std/src/rt.rs:51 [INFO] [stderr] 27: 0x558137795548 - std::rt::lang_start::h92ae6c38b7978676 [INFO] [stderr] 28: 0x558137794b2b - main [INFO] [stderr] 29: 0x7f19c19df0b3 - __libc_start_main [INFO] [stderr] 30: 0x5581377910ce - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "a63cb5e48c14b34365bb0a2f06f9dc0f98262168bc70587fb53b08237e8fcb5f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a63cb5e48c14b34365bb0a2f06f9dc0f98262168bc70587fb53b08237e8fcb5f", kill_on_drop: false }` [INFO] [stdout] a63cb5e48c14b34365bb0a2f06f9dc0f98262168bc70587fb53b08237e8fcb5f