[INFO] fetching crate hdf5 0.7.0... [INFO] checking hdf5-0.7.0 against master#da897dfb6daa268a965d2d73620316ba56020a19 for pr-76219 [INFO] extracting crate hdf5 0.7.0 into /workspace/builds/worker-12/source [INFO] validating manifest of crates.io crate hdf5 0.7.0 on toolchain da897dfb6daa268a965d2d73620316ba56020a19 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+da897dfb6daa268a965d2d73620316ba56020a19" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.7.0 [INFO] finished tweaking crates.io crate hdf5 0.7.0 [INFO] tweaked toml for crates.io crate hdf5 0.7.0 written to /workspace/builds/worker-12/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.7.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+da897dfb6daa268a965d2d73620316ba56020a19" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+da897dfb6daa268a965d2d73620316ba56020a19" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ccb084261295dec3fe3ad8a146958084b57bb43cf4e78de7c4cd4323f9c38c13 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ccb084261295dec3fe3ad8a146958084b57bb43cf4e78de7c4cd4323f9c38c13", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ccb084261295dec3fe3ad8a146958084b57bb43cf4e78de7c4cd4323f9c38c13", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ccb084261295dec3fe3ad8a146958084b57bb43cf4e78de7c4cd4323f9c38c13", kill_on_drop: false }` [INFO] [stdout] ccb084261295dec3fe3ad8a146958084b57bb43cf4e78de7c4cd4323f9c38c13 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+da897dfb6daa268a965d2d73620316ba56020a19" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5f211159969ae627fcf5e2536b1048d29e37fc23cbace496be598c0ae7fcf6dd [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5f211159969ae627fcf5e2536b1048d29e37fc23cbace496be598c0ae7fcf6dd", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling proc-macro-hack-impl v0.4.2 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Checking smallvec v1.3.0 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking ppv-lite86 v0.2.6 [INFO] [stderr] Compiling hdf5 v0.7.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking difference v2.0.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Compiling proc-macro2 v1.0.10 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Checking parking_lot_core v0.7.1 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Compiling proc-macro-hack v0.4.2 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Checking regex v1.3.6 [INFO] [stderr] Checking mashup v0.1.9 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-5425c6a43b5de830/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5641995f69d0 - std::backtrace_rs::backtrace::libunwind::trace::h452faf99f32e7c93 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x5641995f69d0 - std::backtrace_rs::backtrace::trace_unsynchronized::he40edc71437667a1 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x5641995f69d0 - std::sys_common::backtrace::_print_fmt::h6c51d6ade71f46bf [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x5641995f69d0 - ::fmt::h3cd15d7003dec37a [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x5641996155ac - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/core/src/fmt/mod.rs:1082 [INFO] [stderr] 5: 0x5641995f3a57 - std::io::Write::write_fmt::hac61caff894c35ae [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/io/mod.rs:1517 [INFO] [stderr] 6: 0x5641995f8c50 - std::sys_common::backtrace::_print::haa2f390fb7957e3e [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x5641995f8c50 - std::sys_common::backtrace::print::h48c7cbbad9013bb1 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x5641995f8c50 - std::panicking::default_hook::{{closure}}::h8b7ff05a31e71d55 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:208 [INFO] [stderr] 9: 0x5641995f899c - std::panicking::default_hook::h2f00c78800d98e4c [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:227 [INFO] [stderr] 10: 0x5641995f92b3 - std::panicking::rust_panic_with_hook::h4eaa635e4694aef3 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:577 [INFO] [stderr] 11: 0x5641993faffc - std::panicking::begin_panic::{{closure}}::h607a56226a55bbc9 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:506 [INFO] [stderr] 12: 0x5641993e77c9 - std::sys_common::backtrace::__rust_end_short_backtrace::h395439f6182f7d1c [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x5641993faf27 - std::panicking::begin_panic::hc5d04cca843b5caf [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:505 [INFO] [stderr] 14: 0x5641993cc27a - build_script_build::LibrarySearcher::try_locate_hdf5_library::h962097d6fe17d0d5 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549 [INFO] [stderr] 15: 0x5641993cdbbc - build_script_build::main::h6e3a62e69f33e456 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647 [INFO] [stderr] 16: 0x5641993d4b2b - core::ops::function::FnOnce::call_once::h72dec93fa40f6e25 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/core/src/ops/function.rs:227 [INFO] [stderr] 17: 0x5641993d222e - std::sys_common::backtrace::__rust_begin_short_backtrace::h763c09d9ab66dc17 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x5641993d4481 - std::rt::lang_start::{{closure}}::hc2bb5ac272835505 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x5641995f96b1 - core::ops::function::impls:: for &F>::call_once::hecc21eb9018cc197 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/core/src/ops/function.rs:259 [INFO] [stderr] 20: 0x5641995f96b1 - std::panicking::try::do_call::h174ad655d084b5c7 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:381 [INFO] [stderr] 21: 0x5641995f96b1 - std::panicking::try::h479e6054ce28de10 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:345 [INFO] [stderr] 22: 0x5641995f96b1 - std::panic::catch_unwind::hb558ddea2b3e9c45 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panic.rs:382 [INFO] [stderr] 23: 0x5641995f96b1 - std::rt::lang_start_internal::h163149047f0a8b61 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x5641993d4457 - std::rt::lang_start::h5dbce65ad8d36ebf [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x5641993cf2ea - main [INFO] [stderr] 26: 0x7f0ad958f0b3 - __libc_start_main [INFO] [stderr] 27: 0x5641993c70be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "5f211159969ae627fcf5e2536b1048d29e37fc23cbace496be598c0ae7fcf6dd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5f211159969ae627fcf5e2536b1048d29e37fc23cbace496be598c0ae7fcf6dd", kill_on_drop: false }` [INFO] [stdout] 5f211159969ae627fcf5e2536b1048d29e37fc23cbace496be598c0ae7fcf6dd