[INFO] fetching crate flann 0.1.0... [INFO] checking flann-0.1.0 against master#da897dfb6daa268a965d2d73620316ba56020a19 for pr-76219 [INFO] extracting crate flann 0.1.0 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate flann 0.1.0 on toolchain da897dfb6daa268a965d2d73620316ba56020a19 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+da897dfb6daa268a965d2d73620316ba56020a19" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann 0.1.0 [INFO] finished tweaking crates.io crate flann 0.1.0 [INFO] tweaked toml for crates.io crate flann 0.1.0 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+da897dfb6daa268a965d2d73620316ba56020a19" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+da897dfb6daa268a965d2d73620316ba56020a19" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+da897dfb6daa268a965d2d73620316ba56020a19" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c7348c0967a913c7ca3706937a611f5ac9864d5c9b005b7d86377ee13644a9fc [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c7348c0967a913c7ca3706937a611f5ac9864d5c9b005b7d86377ee13644a9fc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c7348c0967a913c7ca3706937a611f5ac9864d5c9b005b7d86377ee13644a9fc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c7348c0967a913c7ca3706937a611f5ac9864d5c9b005b7d86377ee13644a9fc", kill_on_drop: false }` [INFO] [stdout] c7348c0967a913c7ca3706937a611f5ac9864d5c9b005b7d86377ee13644a9fc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+da897dfb6daa268a965d2d73620316ba56020a19" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6d4f6dcfccf267e83db53d471b1a51495ada2215bd1f5f46abbdfa05173c179c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6d4f6dcfccf267e83db53d471b1a51495ada2215bd1f5f46abbdfa05173c179c", kill_on_drop: false }` [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling syn v1.0.40 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Checking either v1.6.0 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Checking miniz_oxide v0.4.1 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Checking backtrace v0.3.50 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Compiling flann-sys v0.1.0 [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-d61ce4b817c03bec/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-14352bdb5181625c/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-14352bdb5181625c/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-14352bdb5181625c/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55847e40b570 - std::backtrace_rs::backtrace::libunwind::trace::h452faf99f32e7c93 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x55847e40b570 - std::backtrace_rs::backtrace::trace_unsynchronized::he40edc71437667a1 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55847e40b570 - std::sys_common::backtrace::_print_fmt::h6c51d6ade71f46bf [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x55847e40b570 - ::fmt::h3cd15d7003dec37a [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x55847e431a0c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/core/src/fmt/mod.rs:1082 [INFO] [stderr] 5: 0x55847e407a37 - std::io::Write::write_fmt::hac61caff894c35ae [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/io/mod.rs:1517 [INFO] [stderr] 6: 0x55847e40df20 - std::sys_common::backtrace::_print::haa2f390fb7957e3e [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x55847e40df20 - std::sys_common::backtrace::print::h48c7cbbad9013bb1 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x55847e40df20 - std::panicking::default_hook::{{closure}}::h8b7ff05a31e71d55 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:208 [INFO] [stderr] 9: 0x55847e40dc6c - std::panicking::default_hook::h2f00c78800d98e4c [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:227 [INFO] [stderr] 10: 0x55847e40e583 - std::panicking::rust_panic_with_hook::h4eaa635e4694aef3 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:577 [INFO] [stderr] 11: 0x55847e40e159 - std::panicking::begin_panic_handler::{{closure}}::hec242f1b136b5ff2 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:484 [INFO] [stderr] 12: 0x55847e40b9dc - std::sys_common::backtrace::__rust_end_short_backtrace::h1f3cc383ee6c0374 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x55847e40e119 - rust_begin_unwind [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:483 [INFO] [stderr] 14: 0x55847e40e0cb - std::panicking::begin_panic_fmt::hebfdcd945bbd27b1 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:437 [INFO] [stderr] 15: 0x55847ded83b7 - cmake::fail::h5ac34a445f962f17 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885 [INFO] [stderr] 16: 0x55847ded7cfc - cmake::run::hdae76e59475531dd [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863 [INFO] [stderr] 17: 0x55847ded376d - cmake::Config::build::h1f94ac9664857d70 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:698 [INFO] [stderr] 18: 0x55847dece410 - build_script_build::main::h746ddc7f96feaf98 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/build.rs:30 [INFO] [stderr] 19: 0x55847deceebb - core::ops::function::FnOnce::call_once::he6b539e354fe17ad [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/core/src/ops/function.rs:227 [INFO] [stderr] 20: 0x55847dececee - std::sys_common::backtrace::__rust_begin_short_backtrace::h3591302888cb43f4 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 21: 0x55847ded0921 - std::rt::lang_start::{{closure}}::hf8a748ec1de1b8b9 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/rt.rs:66 [INFO] [stderr] 22: 0x55847e40e981 - core::ops::function::impls:: for &F>::call_once::hecc21eb9018cc197 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/core/src/ops/function.rs:259 [INFO] [stderr] 23: 0x55847e40e981 - std::panicking::try::do_call::h174ad655d084b5c7 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:381 [INFO] [stderr] 24: 0x55847e40e981 - std::panicking::try::h479e6054ce28de10 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panicking.rs:345 [INFO] [stderr] 25: 0x55847e40e981 - std::panic::catch_unwind::hb558ddea2b3e9c45 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/panic.rs:382 [INFO] [stderr] 26: 0x55847e40e981 - std::rt::lang_start_internal::h163149047f0a8b61 [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/rt.rs:51 [INFO] [stderr] 27: 0x55847ded08f7 - std::rt::lang_start::h2ac915872f658dad [INFO] [stderr] at /rustc/da897dfb6daa268a965d2d73620316ba56020a19/library/std/src/rt.rs:65 [INFO] [stderr] 28: 0x55847dece81a - main [INFO] [stderr] 29: 0x7fb6b250d0b3 - __libc_start_main [INFO] [stderr] 30: 0x55847dece0ce - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "6d4f6dcfccf267e83db53d471b1a51495ada2215bd1f5f46abbdfa05173c179c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6d4f6dcfccf267e83db53d471b1a51495ada2215bd1f5f46abbdfa05173c179c", kill_on_drop: false }` [INFO] [stdout] 6d4f6dcfccf267e83db53d471b1a51495ada2215bd1f5f46abbdfa05173c179c