[INFO] fetching crate hdf5 0.7.0... [INFO] checking hdf5-0.7.0 against try#b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f for pr-76104 [INFO] extracting crate hdf5 0.7.0 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate hdf5 0.7.0 on toolchain b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.7.0 [INFO] finished tweaking crates.io crate hdf5 0.7.0 [INFO] tweaked toml for crates.io crate hdf5 0.7.0 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.7.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded mashup-impl v0.1.9 [INFO] [stderr] Downloaded mashup v0.1.9 [INFO] [stderr] Downloaded libloading v0.6.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] aeb53ad227af7766a3b7481195b635983bf4fcf8f3df629dbb3587d97cefbb48 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "aeb53ad227af7766a3b7481195b635983bf4fcf8f3df629dbb3587d97cefbb48", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "aeb53ad227af7766a3b7481195b635983bf4fcf8f3df629dbb3587d97cefbb48", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aeb53ad227af7766a3b7481195b635983bf4fcf8f3df629dbb3587d97cefbb48", kill_on_drop: false }` [INFO] [stdout] aeb53ad227af7766a3b7481195b635983bf4fcf8f3df629dbb3587d97cefbb48 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 73305dfb287f7b59b06983f0d13126f517511e0b55110b33602043ba4323329f [INFO] running `Command { std: "docker" "start" "-a" "73305dfb287f7b59b06983f0d13126f517511e0b55110b33602043ba4323329f", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Compiling proc-macro2 v1.0.10 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling proc-macro-hack-impl v0.4.2 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Checking ppv-lite86 v0.2.6 [INFO] [stderr] Compiling hdf5 v0.7.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking difference v2.0.0 [INFO] [stderr] Checking regex-syntax v0.6.17 [INFO] [stderr] Checking remove_dir_all v0.5.2 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking memchr v2.3.3 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling proc-macro-hack v0.4.2 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Checking parking_lot_core v0.7.1 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking mashup v0.1.9 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Compiling regex v1.3.6 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-5425c6a43b5de830/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x564c0b5acd60 - std::backtrace_rs::backtrace::libunwind::trace::h14e81b0c16b543a7 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x564c0b5acd60 - std::backtrace_rs::backtrace::trace_unsynchronized::hc9e39e172835ff32 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x564c0b5acd60 - std::sys_common::backtrace::_print_fmt::h31994df1c8c77b8f [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x564c0b5acd60 - ::fmt::he74e98acff43ec99 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x564c0b5cb77c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/core/src/fmt/mod.rs:1080 [INFO] [stderr] 5: 0x564c0b5a9df7 - std::io::Write::write_fmt::hea6289e6649ff508 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/io/mod.rs:1517 [INFO] [stderr] 6: 0x564c0b5aefe0 - std::sys_common::backtrace::_print::h8cc65937fea24014 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x564c0b5aefe0 - std::sys_common::backtrace::print::hff6a0ebb96535e34 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x564c0b5aefe0 - std::panicking::default_hook::{{closure}}::h71b9700c5dda1b1d [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:208 [INFO] [stderr] 9: 0x564c0b5aed2c - std::panicking::default_hook::h0c46e634c06c69b6 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:227 [INFO] [stderr] 10: 0x564c0b5af643 - std::panicking::rust_panic_with_hook::he52576a0c2093334 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:577 [INFO] [stderr] 11: 0x564c0b3b1b5c - std::panicking::begin_panic::{{closure}}::h4bdf29e46e08c715 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:506 [INFO] [stderr] 12: 0x564c0b3ba5b9 - std::sys_common::backtrace::__rust_end_short_backtrace::h1f4e8deec12062b6 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x564c0b3b1a87 - std::panicking::begin_panic::haa7681cfce515903 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:505 [INFO] [stderr] 14: 0x564c0b38523a - build_script_build::LibrarySearcher::try_locate_hdf5_library::h962097d6fe17d0d5 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549 [INFO] [stderr] 15: 0x564c0b386b7c - build_script_build::main::h6e3a62e69f33e456 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647 [INFO] [stderr] 16: 0x564c0b38cf6b - core::ops::function::FnOnce::call_once::h72dec93fa40f6e25 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/core/src/ops/function.rs:227 [INFO] [stderr] 17: 0x564c0b38b22e - std::sys_common::backtrace::__rust_begin_short_backtrace::h6117de835ceb6b71 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x564c0b38e061 - std::rt::lang_start::{{closure}}::hfd8140c1d7448d50 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x564c0b5afa41 - core::ops::function::impls:: for &F>::call_once::h009d20b8a620bf60 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/core/src/ops/function.rs:259 [INFO] [stderr] 20: 0x564c0b5afa41 - std::panicking::try::do_call::h09431c39e2107c90 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:381 [INFO] [stderr] 21: 0x564c0b5afa41 - std::panicking::try::he27cf60b958af343 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:345 [INFO] [stderr] 22: 0x564c0b5afa41 - std::panic::catch_unwind::h7b646b0041dc5591 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panic.rs:382 [INFO] [stderr] 23: 0x564c0b5afa41 - std::rt::lang_start_internal::hdad6c98af1e4747e [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x564c0b38e037 - std::rt::lang_start::hd6aa7db2764008c6 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x564c0b38828a - main [INFO] [stderr] 26: 0x7f26dec1d0b3 - __libc_start_main [INFO] [stderr] 27: 0x564c0b3800be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "73305dfb287f7b59b06983f0d13126f517511e0b55110b33602043ba4323329f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "73305dfb287f7b59b06983f0d13126f517511e0b55110b33602043ba4323329f", kill_on_drop: false }` [INFO] [stdout] 73305dfb287f7b59b06983f0d13126f517511e0b55110b33602043ba4323329f