[INFO] cloning repository https://github.com/clemson-cal/app-binary2d [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clemson-cal/app-binary2d" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 87a91bc3bfdde1978eecb16fdcd004a835b44806 [INFO] checking clemson-cal/app-binary2d against try#b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f for pr-76104 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/clemson-cal/app-binary2d on toolchain b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/clemson-cal/app-binary2d [INFO] finished tweaking git repo https://github.com/clemson-cal/app-binary2d [INFO] tweaked toml for git repo https://github.com/clemson-cal/app-binary2d written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/clemson-cal/app-binary2d already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 7bb7a28a48611ca7b1692456094d5676e48e193d5211f5308d503932ddd4ba5b [INFO] running `Command { std: "docker" "start" "-a" "7bb7a28a48611ca7b1692456094d5676e48e193d5211f5308d503932ddd4ba5b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7bb7a28a48611ca7b1692456094d5676e48e193d5211f5308d503932ddd4ba5b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7bb7a28a48611ca7b1692456094d5676e48e193d5211f5308d503932ddd4ba5b", kill_on_drop: false }` [INFO] [stdout] 7bb7a28a48611ca7b1692456094d5676e48e193d5211f5308d503932ddd4ba5b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 7880ed74bc3639385dd4eac0ac8e014336df19355478262e91cdb1a773bc719c [INFO] running `Command { std: "docker" "start" "-a" "7880ed74bc3639385dd4eac0ac8e014336df19355478262e91cdb1a773bc719c", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.21 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking smallvec v1.4.2 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Checking hashbrown v0.9.0 [INFO] [stderr] Checking os_str_bytes v2.3.2 [INFO] [stderr] Checking strsim v0.10.0 [INFO] [stderr] Checking termcolor v1.1.0 [INFO] [stderr] Checking hydro-iso2d v0.1.0 (https://github.com/clemson-cal/hydro-iso2d#3efbf6d7) [INFO] [stderr] Checking kepler-two-body v0.1.0 (https://github.com/clemson-cal/kepler-two-body#d42ade30) [INFO] [stderr] Checking glob v0.3.0 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-bigint v0.3.0 [INFO] [stderr] Compiling memoffset v0.5.5 [INFO] [stderr] Compiling num-rational v0.3.0 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-iter v0.1.41 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking parking_lot_core v0.7.2 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking crossbeam-queue v0.2.3 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking num-complex v0.3.0 [INFO] [stderr] Checking crossbeam v0.7.3 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Checking num v0.3.0 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Checking godunov-core v0.1.0 (https://github.com/clemson-cal/godunov-core#49b75883) [INFO] [stderr] Checking ndarray-ops v0.1.0 (https://github.com/clemson-cal/ndarray-ops#6e8165ff) [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-a830e8aed8222ddd/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55b12a52a8b0 - std::backtrace_rs::backtrace::libunwind::trace::h14e81b0c16b543a7 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x55b12a52a8b0 - std::backtrace_rs::backtrace::trace_unsynchronized::hc9e39e172835ff32 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55b12a52a8b0 - std::sys_common::backtrace::_print_fmt::h31994df1c8c77b8f [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x55b12a52a8b0 - ::fmt::he74e98acff43ec99 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x55b12a5492cc - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/core/src/fmt/mod.rs:1080 [INFO] [stderr] 5: 0x55b12a527947 - std::io::Write::write_fmt::hea6289e6649ff508 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/io/mod.rs:1517 [INFO] [stderr] 6: 0x55b12a52cb30 - std::sys_common::backtrace::_print::h8cc65937fea24014 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x55b12a52cb30 - std::sys_common::backtrace::print::hff6a0ebb96535e34 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x55b12a52cb30 - std::panicking::default_hook::{{closure}}::h71b9700c5dda1b1d [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:208 [INFO] [stderr] 9: 0x55b12a52c87c - std::panicking::default_hook::h0c46e634c06c69b6 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:227 [INFO] [stderr] 10: 0x55b12a52d193 - std::panicking::rust_panic_with_hook::he52576a0c2093334 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:577 [INFO] [stderr] 11: 0x55b12a476dac - std::panicking::begin_panic::{{closure}}::h22f449f4c0558392 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:506 [INFO] [stderr] 12: 0x55b12a466c69 - std::sys_common::backtrace::__rust_end_short_backtrace::he61f2d3a8b4e9d2c [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x55b12a476cd7 - std::panicking::begin_panic::h731bc6210f7fa31e [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:505 [INFO] [stderr] 14: 0x55b12a30322a - build_script_build::LibrarySearcher::try_locate_hdf5_library::h4c1ea8e4175fae53 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549 [INFO] [stderr] 15: 0x55b12a304b6c - build_script_build::main::ha23fb580780f3079 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647 [INFO] [stderr] 16: 0x55b12a30ae8b - core::ops::function::FnOnce::call_once::h7fa24495dcc38e13 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/core/src/ops/function.rs:227 [INFO] [stderr] 17: 0x55b12a30921e - std::sys_common::backtrace::__rust_begin_short_backtrace::hdd725a059fbc581a [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x55b12a30c121 - std::rt::lang_start::{{closure}}::h33c8acde50161789 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x55b12a52d591 - core::ops::function::impls:: for &F>::call_once::h009d20b8a620bf60 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/core/src/ops/function.rs:259 [INFO] [stderr] 20: 0x55b12a52d591 - std::panicking::try::do_call::h09431c39e2107c90 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:381 [INFO] [stderr] 21: 0x55b12a52d591 - std::panicking::try::he27cf60b958af343 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panicking.rs:345 [INFO] [stderr] 22: 0x55b12a52d591 - std::panic::catch_unwind::h7b646b0041dc5591 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/panic.rs:382 [INFO] [stderr] 23: 0x55b12a52d591 - std::rt::lang_start_internal::hdad6c98af1e4747e [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x55b12a30c0f7 - std::rt::lang_start::h32297805575aa9b2 [INFO] [stderr] at /rustc/b1cc2963e8346ba1f5afb1edb86dbcf3f9ef0c5f/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x55b12a30627a - main [INFO] [stderr] 26: 0x7f1ba95d30b3 - __libc_start_main [INFO] [stderr] 27: 0x55b12a2fe0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "7880ed74bc3639385dd4eac0ac8e014336df19355478262e91cdb1a773bc719c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7880ed74bc3639385dd4eac0ac8e014336df19355478262e91cdb1a773bc719c", kill_on_drop: false }` [INFO] [stdout] 7880ed74bc3639385dd4eac0ac8e014336df19355478262e91cdb1a773bc719c