[INFO] fetching crate netcdf 0.5.1... [INFO] checking netcdf-0.5.1 against master#a874956d940ecb3ed524b6176a171219ac4787ea for pr-76104 [INFO] extracting crate netcdf 0.5.1 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate netcdf 0.5.1 on toolchain a874956d940ecb3ed524b6176a171219ac4787ea [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a874956d940ecb3ed524b6176a171219ac4787ea" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf 0.5.1 [INFO] finished tweaking crates.io crate netcdf 0.5.1 [INFO] tweaked toml for crates.io crate netcdf 0.5.1 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate crates.io crate netcdf 0.5.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a874956d940ecb3ed524b6176a171219ac4787ea" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+a874956d940ecb3ed524b6176a171219ac4787ea" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] caf35d4ba2817b07d7bd4fb9c45fc6521b99f5c1688cd4a1315eba34937086d6 [INFO] running `Command { std: "docker" "start" "-a" "caf35d4ba2817b07d7bd4fb9c45fc6521b99f5c1688cd4a1315eba34937086d6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "caf35d4ba2817b07d7bd4fb9c45fc6521b99f5c1688cd4a1315eba34937086d6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "caf35d4ba2817b07d7bd4fb9c45fc6521b99f5c1688cd4a1315eba34937086d6", kill_on_drop: false }` [INFO] [stdout] caf35d4ba2817b07d7bd4fb9c45fc6521b99f5c1688cd4a1315eba34937086d6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+a874956d940ecb3ed524b6176a171219ac4787ea" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a1b1a8c62f67a674003d34992b49153f51750fc40e4eff3dd2ffa105d6ab3b8e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a1b1a8c62f67a674003d34992b49153f51750fc40e4eff3dd2ffa105d6ab3b8e", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.69 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling proc-macro2 v1.0.10 [INFO] [stderr] Compiling pkg-config v0.3.18 [INFO] [stderr] Compiling version_check v0.9.1 [INFO] [stderr] Compiling libloading v0.6.2 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling cc v1.0.58 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Compiling netcdf-sys v0.3.2 [INFO] [stderr] Checking ppv-lite86 v0.2.6 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Checking unicode-width v0.1.7 [INFO] [stderr] Compiling unicode-segmentation v1.6.0 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking remove_dir_all v0.5.2 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.2 [INFO] [stderr] Compiling proc-macro-error v1.0.2 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Checking clap v2.33.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking tempfile v3.1.0 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Compiling syn-mid v0.5.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-9f7a24b17be8cf24/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55ac38dfe720 - std::backtrace_rs::backtrace::libunwind::trace::h14e81b0c16b543a7 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x55ac38dfe720 - std::backtrace_rs::backtrace::trace_unsynchronized::hc9e39e172835ff32 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55ac38dfe720 - std::sys_common::backtrace::_print_fmt::h31994df1c8c77b8f [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x55ac38dfe720 - ::fmt::he74e98acff43ec99 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x55ac38e1d13c - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/core/src/fmt/mod.rs:1080 [INFO] [stderr] 5: 0x55ac38dfb7b7 - std::io::Write::write_fmt::hea6289e6649ff508 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/io/mod.rs:1517 [INFO] [stderr] 6: 0x55ac38e009a0 - std::sys_common::backtrace::_print::h8cc65937fea24014 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x55ac38e009a0 - std::sys_common::backtrace::print::hff6a0ebb96535e34 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x55ac38e009a0 - std::panicking::default_hook::{{closure}}::h71b9700c5dda1b1d [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/panicking.rs:208 [INFO] [stderr] 9: 0x55ac38e006ec - std::panicking::default_hook::h0c46e634c06c69b6 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/panicking.rs:227 [INFO] [stderr] 10: 0x55ac38e01003 - std::panicking::rust_panic_with_hook::he52576a0c2093334 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/panicking.rs:577 [INFO] [stderr] 11: 0x55ac38d4ac1c - std::panicking::begin_panic::{{closure}}::h22f449f4c0558392 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/panicking.rs:506 [INFO] [stderr] 12: 0x55ac38d3aad9 - std::sys_common::backtrace::__rust_end_short_backtrace::he61f2d3a8b4e9d2c [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x55ac38d4ab47 - std::panicking::begin_panic::h731bc6210f7fa31e [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/panicking.rs:505 [INFO] [stderr] 14: 0x55ac38bd722a - build_script_build::LibrarySearcher::try_locate_hdf5_library::h194a37f6c9e6c951 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549 [INFO] [stderr] 15: 0x55ac38bd8b6c - build_script_build::main::he3aeace68e639ab8 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647 [INFO] [stderr] 16: 0x55ac38bdee1b - core::ops::function::FnOnce::call_once::h5ed10907d22184e1 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/core/src/ops/function.rs:227 [INFO] [stderr] 17: 0x55ac38bdd21e - std::sys_common::backtrace::__rust_begin_short_backtrace::h5b63401333e2839c [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x55ac38be0121 - std::rt::lang_start::{{closure}}::h298743dfa347af3a [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x55ac38e01401 - core::ops::function::impls:: for &F>::call_once::h009d20b8a620bf60 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/core/src/ops/function.rs:259 [INFO] [stderr] 20: 0x55ac38e01401 - std::panicking::try::do_call::h09431c39e2107c90 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/panicking.rs:381 [INFO] [stderr] 21: 0x55ac38e01401 - std::panicking::try::he27cf60b958af343 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/panicking.rs:345 [INFO] [stderr] 22: 0x55ac38e01401 - std::panic::catch_unwind::h7b646b0041dc5591 [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/panic.rs:382 [INFO] [stderr] 23: 0x55ac38e01401 - std::rt::lang_start_internal::hdad6c98af1e4747e [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x55ac38be00f7 - std::rt::lang_start::h23ee8597d967b41d [INFO] [stderr] at /rustc/a874956d940ecb3ed524b6176a171219ac4787ea/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x55ac38bda27a - main [INFO] [stderr] 26: 0x7f6e18a6c0b3 - __libc_start_main [INFO] [stderr] 27: 0x55ac38bd20be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "a1b1a8c62f67a674003d34992b49153f51750fc40e4eff3dd2ffa105d6ab3b8e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a1b1a8c62f67a674003d34992b49153f51750fc40e4eff3dd2ffa105d6ab3b8e", kill_on_drop: false }` [INFO] [stdout] a1b1a8c62f67a674003d34992b49153f51750fc40e4eff3dd2ffa105d6ab3b8e