[INFO] fetching crate netcdf 0.5.1...
[INFO] checking netcdf-0.5.1 against try#f6e2f78768c57172b99c3e85892f867894dc7e30 for pr-75502
[INFO] extracting crate netcdf 0.5.1 into /workspace/builds/worker-5/source
[INFO] validating manifest of crates.io crate netcdf 0.5.1 on toolchain f6e2f78768c57172b99c3e85892f867894dc7e30
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f6e2f78768c57172b99c3e85892f867894dc7e30" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate netcdf 0.5.1
[INFO] finished tweaking crates.io crate netcdf 0.5.1
[INFO] tweaked toml for crates.io crate netcdf 0.5.1 written to /workspace/builds/worker-5/source/Cargo.toml
[INFO] crate crates.io crate netcdf 0.5.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f6e2f78768c57172b99c3e85892f867894dc7e30" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded netcdf-sys v0.3.2
[INFO] [stderr]   Downloaded netcdf-src v0.1.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+f6e2f78768c57172b99c3e85892f867894dc7e30" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] cf37add1eccf6920481370dbc4b9ce14bf6fbe12c5af680b082b861871fa29e6
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "cf37add1eccf6920481370dbc4b9ce14bf6fbe12c5af680b082b861871fa29e6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "cf37add1eccf6920481370dbc4b9ce14bf6fbe12c5af680b082b861871fa29e6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cf37add1eccf6920481370dbc4b9ce14bf6fbe12c5af680b082b861871fa29e6", kill_on_drop: false }`
[INFO] [stdout] cf37add1eccf6920481370dbc4b9ce14bf6fbe12c5af680b082b861871fa29e6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+f6e2f78768c57172b99c3e85892f867894dc7e30" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2fed8e822e600421eba99234ff99b1cbc8c4d1586627051484fbc89aceeda561
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "2fed8e822e600421eba99234ff99b1cbc8c4d1586627051484fbc89aceeda561", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling libloading v0.6.2
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]     Checking either v1.5.3
[INFO] [stderr]     Checking ppv-lite86 v0.2.6
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]     Checking unicode-width v0.1.7
[INFO] [stderr]    Compiling netcdf-sys v0.3.2
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.2
[INFO] [stderr]    Compiling proc-macro-error v1.0.2
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.10
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]     Checking clap v2.33.0
[INFO] [stderr]    Compiling quote v1.0.3
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]    Compiling syn v1.0.17
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]     Checking tempfile v3.1.0
[INFO] [stderr]     Checking ndarray v0.13.0
[INFO] [stderr]    Compiling hdf5-sys v0.7.0
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-9f7a24b17be8cf24/build-script-build` (exit code: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5653ec6a6b70 - std::backtrace_rs::backtrace::libunwind::trace::ha1eabb142084ea37
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96
[INFO] [stderr]      1:     0x5653ec6a6b70 - std::backtrace_rs::backtrace::trace_unsynchronized::hbb8825661d997281
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/../../backtrace/src/backtrace/mod.rs:66
[INFO] [stderr]      2:     0x5653ec6a6b70 - std::sys_common::backtrace::_print_fmt::h26d850e2f7183914
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/sys_common/backtrace.rs:79
[INFO] [stderr]      3:     0x5653ec6a6b70 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h3834b06f68a2b012
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/sys_common/backtrace.rs:58
[INFO] [stderr]      4:     0x5653ec6c609c - core::fmt::write::h3a043650ba7bf668
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/core/src/fmt/mod.rs:1117
[INFO] [stderr]      5:     0x5653ec6a3e05 - std::io::Write::write_fmt::h9c0c8944a1898139
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/io/mod.rs:1510
[INFO] [stderr]      6:     0x5653ec6a8dd0 - std::sys_common::backtrace::_print::h693c0c2cc41d4d10
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/sys_common/backtrace.rs:61
[INFO] [stderr]      7:     0x5653ec6a8dd0 - std::sys_common::backtrace::print::h213be73e5670b8ea
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/sys_common/backtrace.rs:48
[INFO] [stderr]      8:     0x5653ec6a8dd0 - std::panicking::default_hook::{{closure}}::h2d49a3361cc4e7ea
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/panicking.rs:200
[INFO] [stderr]      9:     0x5653ec6a8b1c - std::panicking::default_hook::hd41fbdeba93207ba
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/panicking.rs:219
[INFO] [stderr]     10:     0x5653ec6a9433 - std::panicking::rust_panic_with_hook::hcab398664b4bd473
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/panicking.rs:569
[INFO] [stderr]     11:     0x5653ec5fc54c - std::panicking::begin_panic::{{closure}}::h308af555bb6de689
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/panicking.rs:498
[INFO] [stderr]     12:     0x5653ec5e2ba9 - std::sys_common::backtrace::__rust_end_short_backtrace::h38ca0156b7a72f21
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/sys_common/backtrace.rs:153
[INFO] [stderr]     13:     0x5653ec5fc477 - std::panicking::begin_panic::h46895ccb47a33c85
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/panicking.rs:497
[INFO] [stderr]     14:     0x5653ec47b2fc - build_script_build::LibrarySearcher::try_locate_hdf5_library::hacdc07788e5f2a57
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549
[INFO] [stderr]     15:     0x5653ec47cc7c - build_script_build::main::he3aeace68e639ab8
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647
[INFO] [stderr]     16:     0x5653ec483afb - core::ops::function::FnOnce::call_once::h0e82151f69283083
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/core/src/ops/function.rs:233
[INFO] [stderr]     17:     0x5653ec48191e - std::sys_common::backtrace::__rust_begin_short_backtrace::h4ea4c6c1e85be358
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/sys_common/backtrace.rs:137
[INFO] [stderr]     18:     0x5653ec483501 - std::rt::lang_start::{{closure}}::h258bb5db99855987
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/rt.rs:66
[INFO] [stderr]     19:     0x5653ec6a9842 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hde9814ae740a85dc
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/core/src/ops/function.rs:265
[INFO] [stderr]     20:     0x5653ec6a9842 - std::panicking::try::do_call::h3026bab8cd7540d7
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/panicking.rs:373
[INFO] [stderr]     21:     0x5653ec6a9842 - std::panicking::try::h852bb5e5a66f7f84
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/panicking.rs:337
[INFO] [stderr]     22:     0x5653ec6a9842 - std::panic::catch_unwind::hfeb0f3dddf7c6a72
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/panic.rs:394
[INFO] [stderr]     23:     0x5653ec6a9842 - std::rt::lang_start_internal::h32f0ac6e87476559
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/rt.rs:51
[INFO] [stderr]     24:     0x5653ec4834d7 - std::rt::lang_start::hd6131699452e5f29
[INFO] [stderr]                                  at /rustc/f6e2f78768c57172b99c3e85892f867894dc7e30/library/std/src/rt.rs:65
[INFO] [stderr]     25:     0x5653ec47e3ca - main
[INFO] [stderr]     26:     0x7fe74bee20b3 - __libc_start_main
[INFO] [stderr]     27:     0x5653ec4760be - _start
[INFO] [stderr]     28:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "2fed8e822e600421eba99234ff99b1cbc8c4d1586627051484fbc89aceeda561", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2fed8e822e600421eba99234ff99b1cbc8c4d1586627051484fbc89aceeda561", kill_on_drop: false }`
[INFO] [stdout] 2fed8e822e600421eba99234ff99b1cbc8c4d1586627051484fbc89aceeda561