[INFO] cloning repository https://github.com/eclarke/qgramr
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/eclarke/qgramr" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Feclarke%2Fqgramr", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Feclarke%2Fqgramr'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 797461dce20a90970f9abcc23ec87e72339b200c
[INFO] checking eclarke/qgramr against try#f6e2f78768c57172b99c3e85892f867894dc7e30 for pr-75502
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Feclarke%2Fqgramr" "/workspace/builds/worker-5/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/eclarke/qgramr on toolchain f6e2f78768c57172b99c3e85892f867894dc7e30
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f6e2f78768c57172b99c3e85892f867894dc7e30" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/eclarke/qgramr
[INFO] finished tweaking git repo https://github.com/eclarke/qgramr
[INFO] tweaked toml for git repo https://github.com/eclarke/qgramr written to /workspace/builds/worker-5/source/Cargo.toml
[INFO] crate git repo https://github.com/eclarke/qgramr already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f6e2f78768c57172b99c3e85892f867894dc7e30" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] error: the lock file /workspace/builds/worker-5/source/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag.
[INFO] the lockfile is outdated, regenerating it
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f6e2f78768c57172b99c3e85892f867894dc7e30" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+f6e2f78768c57172b99c3e85892f867894dc7e30" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bytecount v0.6.0
[INFO] [stderr]   Downloaded statrs v0.12.0
[INFO] [stderr]   Downloaded bio-types v0.7.0
[INFO] [stderr]   Downloaded bv v0.11.1
[INFO] [stderr]   Downloaded bio v0.32.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded triple_accel v0.3.2
[INFO] [stderr]   Downloaded feature-probe v0.1.1
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:e18d859f9e32a1da89bc7b2d7d51e13b57342044d1295d9fc0dd0068c58eb3d1" "/opt/rustwide/cargo-home/bin/cargo" "+f6e2f78768c57172b99c3e85892f867894dc7e30" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] b3acb0727867176518b1ea08037bfe7caa576ca6ba7f9da831d7f8c588997026
[INFO] running `Command { std: "docker" "start" "-a" "b3acb0727867176518b1ea08037bfe7caa576ca6ba7f9da831d7f8c588997026", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b3acb0727867176518b1ea08037bfe7caa576ca6ba7f9da831d7f8c588997026", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b3acb0727867176518b1ea08037bfe7caa576ca6ba7f9da831d7f8c588997026", kill_on_drop: false }`
[INFO] [stdout] b3acb0727867176518b1ea08037bfe7caa576ca6ba7f9da831d7f8c588997026
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:e18d859f9e32a1da89bc7b2d7d51e13b57342044d1295d9fc0dd0068c58eb3d1" "/opt/rustwide/cargo-home/bin/cargo" "+f6e2f78768c57172b99c3e85892f867894dc7e30" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 616c5628c677f06e5bb12021069f3af694ae2d35221ef41c561efbcf24062025
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "616c5628c677f06e5bb12021069f3af694ae2d35221ef41c561efbcf24062025", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.39
[INFO] [stderr]    Compiling serde_derive v1.0.115
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling serde v1.0.115
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]     Checking bit-vec v0.6.2
[INFO] [stderr]     Checking either v1.6.0
[INFO] [stderr]     Checking array-macro v1.0.5
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]     Checking strum v0.18.0
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking triple_accel v0.3.2
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling hashbrown v0.8.2
[INFO] [stderr]    Compiling indexmap v1.5.1
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking aho-corasick v0.7.13
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking ordered-float v1.1.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling enum-map-derive v0.4.3
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]     Checking enum-map v0.6.2
[INFO] [stderr]     Checking snafu v0.6.8
[INFO] [stderr]     Checking bstr v0.2.13
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking multimap v0.8.2
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking qgramr v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] error[E0599]: no method named `read` found for struct `bio::io::fasta::Reader<std::fs::File>` in the current scope
[INFO] [stdout]  --> src/main.rs:9:12
[INFO] [stdout]   |
[INFO] [stdout] 9 |     reader.read(&mut rec).ok().expect("Error reading record");
[INFO] [stdout]   |            ^^^^ method not found in `bio::io::fasta::Reader<std::fs::File>`
[INFO] [stdout]   |
[INFO] [stdout]   = help: items from traits can only be used if the trait is in scope
[INFO] [stdout] help: the following trait is implemented but not in scope; perhaps add a `use` for it:
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio::io::fasta::FastaRead;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `read` found for struct `bio::io::fasta::Reader<std::fs::File>` in the current scope
[INFO] [stdout]  --> src/main.rs:9:12
[INFO] [stdout]   |
[INFO] [stdout] 9 |     reader.read(&mut rec).ok().expect("Error reading record");
[INFO] [stdout]   |            ^^^^ method not found in `bio::io::fasta::Reader<std::fs::File>`
[INFO] [stdout]   |
[INFO] [stdout]   = help: items from traits can only be used if the trait is in scope
[INFO] [stdout] help: the following trait is implemented but not in scope; perhaps add a `use` for it:
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bio::io::fasta::FastaRead;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `expect` found for reference `&str` in the current scope
[INFO] [stdout]   --> src/main.rs:15:52
[INFO] [stdout]    |
[INFO] [stdout] 15 |     println!("Building index over {}...", rec.id().expect("<NA>"));
[INFO] [stdout]    |                                                    ^^^^^^ method not found in `&str`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `expect` found for reference `&str` in the current scope
[INFO] [stdout]   --> src/main.rs:15:52
[INFO] [stdout]    |
[INFO] [stdout] 15 |     println!("Building index over {}...", rec.id().expect("<NA>"));
[INFO] [stdout]    |                                                    ^^^^^^ method not found in `&str`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 2 previous errors
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 2 previous errors
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `qgramr`.
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "616c5628c677f06e5bb12021069f3af694ae2d35221ef41c561efbcf24062025", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "616c5628c677f06e5bb12021069f3af694ae2d35221ef41c561efbcf24062025", kill_on_drop: false }`
[INFO] [stdout] 616c5628c677f06e5bb12021069f3af694ae2d35221ef41c561efbcf24062025