[INFO] fetching crate neuro 0.1.0... [INFO] checking neuro-0.1.0 against master#5e3f1b148db5bfa27fee52464ae1f5d34c49d77b for pr-75502 [INFO] extracting crate neuro 0.1.0 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate neuro 0.1.0 on toolchain 5e3f1b148db5bfa27fee52464ae1f5d34c49d77b [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5e3f1b148db5bfa27fee52464ae1f5d34c49d77b" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate neuro 0.1.0 [INFO] finished tweaking crates.io crate neuro 0.1.0 [INFO] tweaked toml for crates.io crate neuro 0.1.0 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate crates.io crate neuro 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5e3f1b148db5bfa27fee52464ae1f5d34c49d77b" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+5e3f1b148db5bfa27fee52464ae1f5d34c49d77b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1f273fcfb2dee89bcac410513adeef9b8a7a270d51350c9e9ff91ddb904c82a0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "1f273fcfb2dee89bcac410513adeef9b8a7a270d51350c9e9ff91ddb904c82a0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1f273fcfb2dee89bcac410513adeef9b8a7a270d51350c9e9ff91ddb904c82a0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1f273fcfb2dee89bcac410513adeef9b8a7a270d51350c9e9ff91ddb904c82a0", kill_on_drop: false }` [INFO] [stdout] 1f273fcfb2dee89bcac410513adeef9b8a7a270d51350c9e9ff91ddb904c82a0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+5e3f1b148db5bfa27fee52464ae1f5d34c49d77b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fa3068972d444f583a2e1bfa0664845080fcb1b3066aadf690ded96cffd9d309 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "fa3068972d444f583a2e1bfa0664845080fcb1b3066aadf690ded96cffd9d309", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Checking rand_core v0.4.2 [INFO] [stderr] Compiling cc v1.0.50 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Compiling regex-syntax v0.6.14 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Checking adler32 v1.0.4 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Compiling rayon-core v1.7.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Checking ppv-lite86 v0.2.6 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Checking lzw v0.10.0 [INFO] [stderr] Checking ascii v0.9.3 [INFO] [stderr] Checking unicode-width v0.1.7 [INFO] [stderr] Checking color_quant v1.0.1 [INFO] [stderr] Checking number_prefix v0.3.0 [INFO] [stderr] Checking scoped_threadpool v0.1.9 [INFO] [stderr] Checking lock_api v0.2.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking miniz_oxide v0.3.6 [INFO] [stderr] Checking inflate v0.4.5 [INFO] [stderr] Checking rand_core v0.3.1 [INFO] [stderr] Checking rand_jitter v0.1.4 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Checking gif v0.10.3 [INFO] [stderr] Checking matrixmultiply v0.1.15 [INFO] [stderr] Checking rand_xorshift v0.1.1 [INFO] [stderr] Checking rand_hc v0.1.0 [INFO] [stderr] Checking rand_isaac v0.1.1 [INFO] [stderr] Compiling memoffset v0.5.3 [INFO] [stderr] Compiling parking_lot_core v0.5.0 [INFO] [stderr] Compiling parking_lot v0.8.0 [INFO] [stderr] Checking aho-corasick v0.7.9 [INFO] [stderr] Checking smallvec v0.6.13 [INFO] [stderr] Checking regex-automata v0.1.8 [INFO] [stderr] Checking deflate v0.7.20 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Checking c2-chacha v0.2.3 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-bigint v0.2.6 [INFO] [stderr] Compiling num-rational v0.2.3 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Checking tiff v0.4.0 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Checking png v0.15.3 [INFO] [stderr] Checking num_cpus v1.12.0 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking termios v0.3.1 [INFO] [stderr] Checking clicolors-control v1.0.1 [INFO] [stderr] Checking hdf5-types v0.6.0 [INFO] [stderr] Compiling hdf5-derive v0.6.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Checking rand_chacha v0.2.1 [INFO] [stderr] Checking crossbeam-queue v0.2.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking regex v1.3.4 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking console v0.9.2 [INFO] [stderr] Checking indicatif v0.14.0 [INFO] [stderr] Compiling hdf5-sys v0.6.0 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Checking num v0.2.1 [INFO] [stderr] Checking bstr v0.2.11 [INFO] [stderr] Checking jpeg-decoder v0.1.18 [INFO] [stderr] Compiling serde_json v1.0.48 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-f2331432def78570/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5597b88a50f0 - std::backtrace_rs::backtrace::libunwind::trace::ha1eabb142084ea37 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x5597b88a50f0 - std::backtrace_rs::backtrace::trace_unsynchronized::hbb8825661d997281 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x5597b88a50f0 - std::sys_common::backtrace::_print_fmt::h26d850e2f7183914 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x5597b88a50f0 - ::fmt::h3834b06f68a2b012 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x5597b88c453c - core::fmt::write::h3a043650ba7bf668 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/core/src/fmt/mod.rs:1117 [INFO] [stderr] 5: 0x5597b88a2385 - std::io::Write::write_fmt::h9c0c8944a1898139 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/io/mod.rs:1510 [INFO] [stderr] 6: 0x5597b88a7350 - std::sys_common::backtrace::_print::h693c0c2cc41d4d10 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x5597b88a7350 - std::sys_common::backtrace::print::h213be73e5670b8ea [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x5597b88a7350 - std::panicking::default_hook::{{closure}}::h2d49a3361cc4e7ea [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:200 [INFO] [stderr] 9: 0x5597b88a709c - std::panicking::default_hook::hd41fbdeba93207ba [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:219 [INFO] [stderr] 10: 0x5597b88a79b3 - std::panicking::rust_panic_with_hook::hcab398664b4bd473 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:569 [INFO] [stderr] 11: 0x5597b86a637c - std::panicking::begin_panic::{{closure}}::h4c690c4ea689675a [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:498 [INFO] [stderr] 12: 0x5597b8692e29 - std::sys_common::backtrace::__rust_end_short_backtrace::hfce4c6ca66335acb [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x5597b86a62a7 - std::panicking::begin_panic::h5951ca8e8db10b79 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:497 [INFO] [stderr] 14: 0x5597b867941c - build_script_build::LibrarySearcher::try_locate_hdf5_library::hb3f783bb4538e779 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527 [INFO] [stderr] 15: 0x5597b867a7cc - build_script_build::main::h0fa6fe23743a4247 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:605 [INFO] [stderr] 16: 0x5597b867f27b - core::ops::function::FnOnce::call_once::h72265d37f56eda8d [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/core/src/ops/function.rs:233 [INFO] [stderr] 17: 0x5597b867db0e - std::sys_common::backtrace::__rust_begin_short_backtrace::heb338e3e7c29d37f [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x5597b86802c1 - std::rt::lang_start::{{closure}}::h55ce069a4dc116ff [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x5597b88a7dc2 - core::ops::function::impls:: for &F>::call_once::hde9814ae740a85dc [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/core/src/ops/function.rs:265 [INFO] [stderr] 20: 0x5597b88a7dc2 - std::panicking::try::do_call::h3026bab8cd7540d7 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:373 [INFO] [stderr] 21: 0x5597b88a7dc2 - std::panicking::try::h852bb5e5a66f7f84 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:337 [INFO] [stderr] 22: 0x5597b88a7dc2 - std::panic::catch_unwind::hfeb0f3dddf7c6a72 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panic.rs:394 [INFO] [stderr] 23: 0x5597b88a7dc2 - std::rt::lang_start_internal::h32f0ac6e87476559 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x5597b8680297 - std::rt::lang_start::hf303ec5eef2b9c76 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x5597b867b32a - main [INFO] [stderr] 26: 0x7f48d59750b3 - __libc_start_main [INFO] [stderr] 27: 0x5597b86750ce - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "fa3068972d444f583a2e1bfa0664845080fcb1b3066aadf690ded96cffd9d309", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fa3068972d444f583a2e1bfa0664845080fcb1b3066aadf690ded96cffd9d309", kill_on_drop: false }` [INFO] [stdout] fa3068972d444f583a2e1bfa0664845080fcb1b3066aadf690ded96cffd9d309