[INFO] fetching crate netcdf-sys 0.3.2... [INFO] checking netcdf-sys-0.3.2 against master#5e3f1b148db5bfa27fee52464ae1f5d34c49d77b for pr-75502 [INFO] extracting crate netcdf-sys 0.3.2 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate netcdf-sys 0.3.2 on toolchain 5e3f1b148db5bfa27fee52464ae1f5d34c49d77b [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5e3f1b148db5bfa27fee52464ae1f5d34c49d77b" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf-sys 0.3.2 [INFO] finished tweaking crates.io crate netcdf-sys 0.3.2 [INFO] tweaked toml for crates.io crate netcdf-sys 0.3.2 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5e3f1b148db5bfa27fee52464ae1f5d34c49d77b" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5e3f1b148db5bfa27fee52464ae1f5d34c49d77b" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+5e3f1b148db5bfa27fee52464ae1f5d34c49d77b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 25cb1f5096529f000e65baa8b1e6b28c13c737bf000ee596e38d24e16b8f9c02 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "25cb1f5096529f000e65baa8b1e6b28c13c737bf000ee596e38d24e16b8f9c02", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "25cb1f5096529f000e65baa8b1e6b28c13c737bf000ee596e38d24e16b8f9c02", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "25cb1f5096529f000e65baa8b1e6b28c13c737bf000ee596e38d24e16b8f9c02", kill_on_drop: false }` [INFO] [stdout] 25cb1f5096529f000e65baa8b1e6b28c13c737bf000ee596e38d24e16b8f9c02 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+5e3f1b148db5bfa27fee52464ae1f5d34c49d77b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f825e7c475df029b38b815412297987cf6abc7222f5b62d48d09f7469b4333a0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f825e7c475df029b38b815412297987cf6abc7222f5b62d48d09f7469b4333a0", kill_on_drop: false }` [INFO] [stderr] Compiling pkg-config v0.3.18 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling libc v0.2.76 [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling netcdf-sys v0.3.2 (/opt/rustwide/workdir) [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Compiling libz-sys v1.1.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-a830e8aed8222ddd/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55806afe7d30 - std::backtrace_rs::backtrace::libunwind::trace::ha1eabb142084ea37 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x55806afe7d30 - std::backtrace_rs::backtrace::trace_unsynchronized::hbb8825661d997281 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55806afe7d30 - std::sys_common::backtrace::_print_fmt::h26d850e2f7183914 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x55806afe7d30 - ::fmt::h3834b06f68a2b012 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x55806b00725c - core::fmt::write::h3a043650ba7bf668 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/core/src/fmt/mod.rs:1117 [INFO] [stderr] 5: 0x55806afe4fc5 - std::io::Write::write_fmt::h9c0c8944a1898139 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/io/mod.rs:1510 [INFO] [stderr] 6: 0x55806afe9f90 - std::sys_common::backtrace::_print::h693c0c2cc41d4d10 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x55806afe9f90 - std::sys_common::backtrace::print::h213be73e5670b8ea [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x55806afe9f90 - std::panicking::default_hook::{{closure}}::h2d49a3361cc4e7ea [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:200 [INFO] [stderr] 9: 0x55806afe9cdc - std::panicking::default_hook::hd41fbdeba93207ba [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:219 [INFO] [stderr] 10: 0x55806afea5f3 - std::panicking::rust_panic_with_hook::hcab398664b4bd473 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:569 [INFO] [stderr] 11: 0x55806af3d70c - std::panicking::begin_panic::{{closure}}::h308af555bb6de689 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:498 [INFO] [stderr] 12: 0x55806af23d69 - std::sys_common::backtrace::__rust_end_short_backtrace::h38ca0156b7a72f21 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x55806af3d637 - std::panicking::begin_panic::h46895ccb47a33c85 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:497 [INFO] [stderr] 14: 0x55806adbc2fc - build_script_build::LibrarySearcher::try_locate_hdf5_library::h1a8debf50be8b578 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549 [INFO] [stderr] 15: 0x55806adbdc7c - build_script_build::main::ha23fb580780f3079 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647 [INFO] [stderr] 16: 0x55806adc4c1b - core::ops::function::FnOnce::call_once::h5a301fda5cac22a1 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/core/src/ops/function.rs:233 [INFO] [stderr] 17: 0x55806adc291e - std::sys_common::backtrace::__rust_begin_short_backtrace::h1d8b5a6d34fe009b [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x55806adc4531 - std::rt::lang_start::{{closure}}::h8786c49ffaa41e77 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x55806afeaa02 - core::ops::function::impls:: for &F>::call_once::hde9814ae740a85dc [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/core/src/ops/function.rs:265 [INFO] [stderr] 20: 0x55806afeaa02 - std::panicking::try::do_call::h3026bab8cd7540d7 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:373 [INFO] [stderr] 21: 0x55806afeaa02 - std::panicking::try::h852bb5e5a66f7f84 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:337 [INFO] [stderr] 22: 0x55806afeaa02 - std::panic::catch_unwind::hfeb0f3dddf7c6a72 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panic.rs:394 [INFO] [stderr] 23: 0x55806afeaa02 - std::rt::lang_start_internal::h32f0ac6e87476559 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x55806adc4507 - std::rt::lang_start::h24c5c40e28f78add [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x55806adbf3ca - main [INFO] [stderr] 26: 0x7f74107fd0b3 - __libc_start_main [INFO] [stderr] 27: 0x55806adb70be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "f825e7c475df029b38b815412297987cf6abc7222f5b62d48d09f7469b4333a0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f825e7c475df029b38b815412297987cf6abc7222f5b62d48d09f7469b4333a0", kill_on_drop: false }` [INFO] [stdout] f825e7c475df029b38b815412297987cf6abc7222f5b62d48d09f7469b4333a0