[INFO] fetching crate hdf5 0.7.0... [INFO] checking hdf5-0.7.0 against master#5e3f1b148db5bfa27fee52464ae1f5d34c49d77b for pr-75502 [INFO] extracting crate hdf5 0.7.0 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate hdf5 0.7.0 on toolchain 5e3f1b148db5bfa27fee52464ae1f5d34c49d77b [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5e3f1b148db5bfa27fee52464ae1f5d34c49d77b" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.7.0 [INFO] finished tweaking crates.io crate hdf5 0.7.0 [INFO] tweaked toml for crates.io crate hdf5 0.7.0 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.7.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5e3f1b148db5bfa27fee52464ae1f5d34c49d77b" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+5e3f1b148db5bfa27fee52464ae1f5d34c49d77b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ea5f628afca6dd59d3f2f42a5f695bf7a99a2f9beb36932d8e0034f27b2f2856 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ea5f628afca6dd59d3f2f42a5f695bf7a99a2f9beb36932d8e0034f27b2f2856", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ea5f628afca6dd59d3f2f42a5f695bf7a99a2f9beb36932d8e0034f27b2f2856", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ea5f628afca6dd59d3f2f42a5f695bf7a99a2f9beb36932d8e0034f27b2f2856", kill_on_drop: false }` [INFO] [stdout] ea5f628afca6dd59d3f2f42a5f695bf7a99a2f9beb36932d8e0034f27b2f2856 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+5e3f1b148db5bfa27fee52464ae1f5d34c49d77b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c9239f9ec7063018aee42b1338b78a68f8badd05a8f81dadb17c4134a1237884 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c9239f9ec7063018aee42b1338b78a68f8badd05a8f81dadb17c4134a1237884", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling proc-macro2 v1.0.10 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Checking smallvec v1.3.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling hdf5 v0.7.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking ppv-lite86 v0.2.6 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Checking parking_lot_core v0.7.1 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Checking mashup v0.1.9 [INFO] [stderr] Compiling regex v1.3.6 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-5425c6a43b5de830/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x560a93a18140 - std::backtrace_rs::backtrace::libunwind::trace::ha1eabb142084ea37 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x560a93a18140 - std::backtrace_rs::backtrace::trace_unsynchronized::hbb8825661d997281 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/../../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x560a93a18140 - std::sys_common::backtrace::_print_fmt::h26d850e2f7183914 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:79 [INFO] [stderr] 3: 0x560a93a18140 - ::fmt::h3834b06f68a2b012 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x560a93a3766c - core::fmt::write::h3a043650ba7bf668 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/core/src/fmt/mod.rs:1117 [INFO] [stderr] 5: 0x560a93a153d5 - std::io::Write::write_fmt::h9c0c8944a1898139 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/io/mod.rs:1510 [INFO] [stderr] 6: 0x560a93a1a3a0 - std::sys_common::backtrace::_print::h693c0c2cc41d4d10 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x560a93a1a3a0 - std::sys_common::backtrace::print::h213be73e5670b8ea [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x560a93a1a3a0 - std::panicking::default_hook::{{closure}}::h2d49a3361cc4e7ea [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:200 [INFO] [stderr] 9: 0x560a93a1a0ec - std::panicking::default_hook::hd41fbdeba93207ba [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:219 [INFO] [stderr] 10: 0x560a93a1aa03 - std::panicking::rust_panic_with_hook::hcab398664b4bd473 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:569 [INFO] [stderr] 11: 0x560a9381af2c - std::panicking::begin_panic::{{closure}}::h4c690c4ea689675a [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:498 [INFO] [stderr] 12: 0x560a93807ab9 - std::sys_common::backtrace::__rust_end_short_backtrace::hfce4c6ca66335acb [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:153 [INFO] [stderr] 13: 0x560a9381ae57 - std::panicking::begin_panic::h5951ca8e8db10b79 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:497 [INFO] [stderr] 14: 0x560a937ec30c - build_script_build::LibrarySearcher::try_locate_hdf5_library::h6f7ba0428b6e2e1d [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549 [INFO] [stderr] 15: 0x560a937edc8c - build_script_build::main::h6e3a62e69f33e456 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647 [INFO] [stderr] 16: 0x560a937f4c4b - core::ops::function::FnOnce::call_once::h73d4e8f6b860db11 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/core/src/ops/function.rs:233 [INFO] [stderr] 17: 0x560a937f292e - std::sys_common::backtrace::__rust_begin_short_backtrace::h0c6c9b6ec67399e9 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/sys_common/backtrace.rs:137 [INFO] [stderr] 18: 0x560a937f9951 - std::rt::lang_start::{{closure}}::h6099895c2ad42749 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/rt.rs:66 [INFO] [stderr] 19: 0x560a93a1ae12 - core::ops::function::impls:: for &F>::call_once::hde9814ae740a85dc [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/core/src/ops/function.rs:265 [INFO] [stderr] 20: 0x560a93a1ae12 - std::panicking::try::do_call::h3026bab8cd7540d7 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:373 [INFO] [stderr] 21: 0x560a93a1ae12 - std::panicking::try::h852bb5e5a66f7f84 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panicking.rs:337 [INFO] [stderr] 22: 0x560a93a1ae12 - std::panic::catch_unwind::hfeb0f3dddf7c6a72 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/panic.rs:394 [INFO] [stderr] 23: 0x560a93a1ae12 - std::rt::lang_start_internal::h32f0ac6e87476559 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/rt.rs:51 [INFO] [stderr] 24: 0x560a937f9927 - std::rt::lang_start::hf2de0780cf5e2d75 [INFO] [stderr] at /rustc/5e3f1b148db5bfa27fee52464ae1f5d34c49d77b/library/std/src/rt.rs:65 [INFO] [stderr] 25: 0x560a937ef3da - main [INFO] [stderr] 26: 0x7f6b21d790b3 - __libc_start_main [INFO] [stderr] 27: 0x560a937e70be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "c9239f9ec7063018aee42b1338b78a68f8badd05a8f81dadb17c4134a1237884", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c9239f9ec7063018aee42b1338b78a68f8badd05a8f81dadb17c4134a1237884", kill_on_drop: false }` [INFO] [stdout] c9239f9ec7063018aee42b1338b78a68f8badd05a8f81dadb17c4134a1237884