[INFO] cloning repository https://github.com/10XGenomics/rust-pseudoaligner
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/rust-pseudoaligner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8533e36a8c7c70de23b57b088d382139fd4d6a2c
[INFO] checking 10XGenomics/rust-pseudoaligner against beta-2020-07-24 for pr-75494-beta
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner" "/workspace/builds/worker-10/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-10/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/10XGenomics/rust-pseudoaligner on toolchain beta-2020-07-24
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner
[INFO] finished tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner
[INFO] tweaked toml for git repo https://github.com/10XGenomics/rust-pseudoaligner written to /workspace/builds/worker-10/source/Cargo.toml
[INFO] crate git repo https://github.com/10XGenomics/rust-pseudoaligner already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2e15831ec744bfd77ec1d4ede3c3e68606bc6e032dfc46441e09093786481f63
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "2e15831ec744bfd77ec1d4ede3c3e68606bc6e032dfc46441e09093786481f63", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2e15831ec744bfd77ec1d4ede3c3e68606bc6e032dfc46441e09093786481f63", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2e15831ec744bfd77ec1d4ede3c3e68606bc6e032dfc46441e09093786481f63", kill_on_drop: false }`
[INFO] [stdout] 2e15831ec744bfd77ec1d4ede3c3e68606bc6e032dfc46441e09093786481f63
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 789f885a71ef246725523e86087fddd3fc9ba8ef8b914b1334f282a24aa3c625
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "789f885a71ef246725523e86087fddd3fc9ba8ef8b914b1334f282a24aa3c625", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.66
[INFO] [stderr]    Compiling proc-macro2 v1.0.6
[INFO] [stderr]    Compiling syn v1.0.7
[INFO] [stderr]    Compiling serde v1.0.104
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling semver-parser v0.7.0
[INFO] [stderr]    Compiling autocfg v0.1.7
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling cc v1.0.50
[INFO] [stderr]     Checking rand_core v0.4.2
[INFO] [stderr]    Compiling memchr v2.3.0
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling ryu v1.0.2
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling rustc-demangle v0.1.16
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]    Compiling log v0.4.8
[INFO] [stderr]     Checking regex-syntax v0.6.13
[INFO] [stderr]    Compiling itoa v0.4.5
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling proc-macro-nested v0.1.3
[INFO] [stderr]    Compiling remove_dir_all v0.5.2
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]     Checking pin-utils v0.1.0-alpha.4
[INFO] [stderr]     Checking slab v0.4.2
[INFO] [stderr]    Compiling failure_derive v0.1.6
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling crc32fast v1.2.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking bit-vec v0.4.4
[INFO] [stderr]    Compiling bio v0.31.0
[INFO] [stderr]     Checking adler32 v1.0.4
[INFO] [stderr]     Checking termcolor v1.1.0
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]     Checking strsim v0.9.3
[INFO] [stderr]     Checking smallvec v1.1.0
[INFO] [stderr]     Checking min-max-heap v1.3.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-bigint v0.2.6
[INFO] [stderr]    Compiling num-iter v0.1.40
[INFO] [stderr]    Compiling num-rational v0.2.3
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]     Checking crossbeam-utils v0.6.6
[INFO] [stderr]     Checking humantime v1.3.0
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking itertools v0.7.11
[INFO] [stderr]     Checking rand_core v0.3.1
[INFO] [stderr]     Checking rand_jitter v0.1.4
[INFO] [stderr]     Checking wyhash v0.3.0
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]    Compiling error-chain v0.12.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.0
[INFO] [stderr]    Compiling rand_chacha v0.1.1
[INFO] [stderr]    Compiling rand_pcg v0.1.2
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling hashbrown v0.6.3
[INFO] [stderr]     Checking miniz_oxide v0.3.5
[INFO] [stderr]     Checking bit-set v0.4.0
[INFO] [stderr]    Compiling bv v0.11.0
[INFO] [stderr]     Checking pretty_assertions v0.5.1
[INFO] [stderr]     Checking rand_xorshift v0.1.1
[INFO] [stderr]     Checking rand_isaac v0.1.1
[INFO] [stderr]     Checking rand_hc v0.1.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking lock_api v0.3.3
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]     Checking regex-automata v0.1.8
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]    Compiling pulldown-cmark v0.2.0
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling backtrace-sys v0.1.32
[INFO] [stderr]    Compiling lz4-sys v1.8.3
[INFO] [stderr]     Checking num_cpus v1.12.0
[INFO] [stderr]     Checking rand_os v0.1.3
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking time v0.1.42
[INFO] [stderr]     Checking rand v0.5.6
[INFO] [stderr]     Checking wait-timeout v0.2.0
[INFO] [stderr]     Checking flate2 v1.0.13
[INFO] [stderr]     Checking crossbeam-queue v0.2.1
[INFO] [stderr]     Checking crossbeam-channel v0.4.3
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking ndarray v0.13.0
[INFO] [stderr]     Checking aho-corasick v0.7.6
[INFO] [stderr]     Checking csv-core v0.1.6
[INFO] [stderr]     Checking chrono v0.4.10
[INFO] [stderr]     Checking rand_chacha v0.2.1
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]    Compiling tempdir v0.3.7
[INFO] [stderr]    Compiling backtrace v0.3.42
[INFO] [stderr]     Checking regex v1.3.3
[INFO] [stderr]     Checking statrs v0.11.0
[INFO] [stderr]     Checking num v0.2.1
[INFO] [stderr]     Checking tempfile v3.1.0
[INFO] [stderr]     Checking rusty-fork v0.2.2
[INFO] [stderr]     Checking proptest v0.9.5
[INFO] [stderr]     Checking env_logger v0.6.2
[INFO] [stderr]     Checking pretty_env_logger v0.3.1
[INFO] [stderr]    Compiling synstructure v0.12.3
[INFO] [stderr]    Compiling serde_derive v1.0.104
[INFO] [stderr]    Compiling proc-macro-hack v0.5.11
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]     Checking failure v0.1.6
[INFO] [stderr]    Compiling futures-macro v0.3.1
[INFO] [stderr]    Compiling const-random-macro v0.1.8
[INFO] [stderr]     Checking const-random v0.1.8
[INFO] [stderr]     Checking ahash v0.2.18
[INFO] [stderr]     Checking snafu v0.6.8
[INFO] [stderr]     Checking futures-util v0.3.1
[INFO] [stderr]     Checking futures-executor v0.3.1
[INFO] [stderr]     Checking futures v0.3.1
[INFO] [stderr]     Checking smallvec v0.6.13
[INFO] [stderr]     Checking bstr v0.2.10
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking serde_json v1.0.45
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking bio-types v0.5.1
[INFO] [stderr]     Checking bincode v1.2.1
[INFO] [stderr]     Checking docopt v1.1.0
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]    Compiling rustc_version v0.2.3
[INFO] [stderr]    Compiling memoffset v0.5.3
[INFO] [stderr]    Compiling parking_lot_core v0.6.2
[INFO] [stderr]    Compiling parking_lot v0.9.0
[INFO] [stderr]    Compiling cargo_metadata v0.6.4
[INFO] [stderr]    Compiling skeptic v0.13.4
[INFO] [stderr]     Checking crossbeam-deque v0.7.2
[INFO] [stderr]     Checking rayon-core v1.7.0
[INFO] [stderr]     Checking dashmap v1.2.1
[INFO] [stderr]     Checking rayon v1.3.0
[INFO] [stderr]    Compiling lz4 v1.23.1
[INFO] [stderr]     Checking shardio v0.7.1
[INFO] [stderr]     Checking boomphf v0.5.2
[INFO] [stderr]     Checking debruijn v0.3.0 (https://github.com/10XGenomics/rust-debruijn#dc41dd29)
[INFO] [stderr]     Checking debruijn_mapping v0.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unnecessary parentheses around type
[INFO] [stdout]    --> src/mappability.rs:120:67
[INFO] [stdout]     |
[INFO] [stdout] 120 | pub fn analyze_graph<K: Kmer>(index: &Pseudoaligner<K>) -> Result<(Vec<MappabilityRecord>), Error> {
[INFO] [stdout]     |                                                                   ^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated item 'debruijn::msp::simple_scan': Please use the `Scanner` type instead 
[INFO] [stdout]    --> src/build_index.rs:252:20
[INFO] [stdout]     |
[INFO] [stdout] 252 |         let msps = debruijn::msp::simple_scan::<_, PmerType>(K::k(), contig, &PERM, !STRANDED);
[INFO] [stdout]     |                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around type
[INFO] [stdout]    --> src/mappability.rs:120:67
[INFO] [stdout]     |
[INFO] [stdout] 120 | pub fn analyze_graph<K: Kmer>(index: &Pseudoaligner<K>) -> Result<(Vec<MappabilityRecord>), Error> {
[INFO] [stdout]     |                                                                   ^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated item 'debruijn::msp::simple_scan': Please use the `Scanner` type instead 
[INFO] [stdout]    --> src/build_index.rs:252:20
[INFO] [stdout]     |
[INFO] [stdout] 252 |         let msps = debruijn::msp::simple_scan::<_, PmerType>(K::k(), contig, &PERM, !STRANDED);
[INFO] [stdout]     |                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `test_gencode_full_build`
[INFO] [stdout]    --> src/build_index.rs:402:8
[INFO] [stdout]     |
[INFO] [stdout] 402 |     fn test_gencode_full_build() -> Result<(), Error> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 16s
[INFO] running `Command { std: "docker" "inspect" "789f885a71ef246725523e86087fddd3fc9ba8ef8b914b1334f282a24aa3c625", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "789f885a71ef246725523e86087fddd3fc9ba8ef8b914b1334f282a24aa3c625", kill_on_drop: false }`
[INFO] [stdout] 789f885a71ef246725523e86087fddd3fc9ba8ef8b914b1334f282a24aa3c625
