[INFO] fetching crate netcdf 0.5.1...
[INFO] checking netcdf-0.5.1 against beta-2020-07-24 for pr-75494-beta
[INFO] extracting crate netcdf 0.5.1 into /workspace/builds/worker-13/source
[INFO] validating manifest of crates.io crate netcdf 0.5.1 on toolchain beta-2020-07-24
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate netcdf 0.5.1
[INFO] finished tweaking crates.io crate netcdf 0.5.1
[INFO] tweaked toml for crates.io crate netcdf 0.5.1 written to /workspace/builds/worker-13/source/Cargo.toml
[INFO] crate crates.io crate netcdf 0.5.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3b3afe16be865e62d9dd953073722c04ab9fff5fc2a85f32fe20b7148d0317de
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "3b3afe16be865e62d9dd953073722c04ab9fff5fc2a85f32fe20b7148d0317de", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3b3afe16be865e62d9dd953073722c04ab9fff5fc2a85f32fe20b7148d0317de", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3b3afe16be865e62d9dd953073722c04ab9fff5fc2a85f32fe20b7148d0317de", kill_on_drop: false }`
[INFO] [stdout] 3b3afe16be865e62d9dd953073722c04ab9fff5fc2a85f32fe20b7148d0317de
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ee120f0fa05e645048638330dc9c0a3b31fd553e6a307fbf85106b54b7fd0cc0
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "ee120f0fa05e645048638330dc9c0a3b31fd553e6a307fbf85106b54b7fd0cc0", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.69
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling proc-macro2 v1.0.10
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling version_check v0.9.1
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling libloading v0.6.2
[INFO] [stderr]    Compiling syn v1.0.17
[INFO] [stderr]    Compiling regex-syntax v0.6.18
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling netcdf-sys v0.3.2
[INFO] [stderr]    Compiling ndarray v0.13.0
[INFO] [stderr]     Checking either v1.5.3
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.6
[INFO] [stderr]     Checking unicode-width v0.1.7
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.2
[INFO] [stderr]    Compiling proc-macro-error v1.0.2
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling quote v1.0.3
[INFO] [stderr]     Checking clap v2.33.0
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking tempfile v3.1.0
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr]    Compiling hdf5-sys v0.7.0
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-663e9917cb5e78c3/build-script-build` (exit code: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55c44a315015 - backtrace::backtrace::libunwind::trace::h5e2646fa3eddf2ea
[INFO] [stderr]                                  at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86
[INFO] [stderr]      1:     0x55c44a315015 - backtrace::backtrace::trace_unsynchronized::hb95dd7f77ce47877
[INFO] [stderr]                                  at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66
[INFO] [stderr]      2:     0x55c44a315015 - std::sys_common::backtrace::_print_fmt::h5e71b67af43fd70d
[INFO] [stderr]                                  at src/libstd/sys_common/backtrace.rs:78
[INFO] [stderr]      3:     0x55c44a315015 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::hdb4a83d2b61107e5
[INFO] [stderr]                                  at src/libstd/sys_common/backtrace.rs:59
[INFO] [stderr]      4:     0x55c44a338a6c - core::fmt::write::ha20e7262fa3e8a7a
[INFO] [stderr]                                  at src/libcore/fmt/mod.rs:1076
[INFO] [stderr]      5:     0x55c44a311d32 - std::io::Write::write_fmt::h1aebfe8a5a79e36d
[INFO] [stderr]                                  at src/libstd/io/mod.rs:1537
[INFO] [stderr]      6:     0x55c44a317530 - std::sys_common::backtrace::_print::h9c07314cc66ba539
[INFO] [stderr]                                  at src/libstd/sys_common/backtrace.rs:62
[INFO] [stderr]      7:     0x55c44a317530 - std::sys_common::backtrace::print::hd1fd65f49a2d8544
[INFO] [stderr]                                  at src/libstd/sys_common/backtrace.rs:49
[INFO] [stderr]      8:     0x55c44a317530 - std::panicking::default_hook::{{closure}}::h222da46485ab36fc
[INFO] [stderr]                                  at src/libstd/panicking.rs:198
[INFO] [stderr]      9:     0x55c44a31727c - std::panicking::default_hook::hc5868949d129ed00
[INFO] [stderr]                                  at src/libstd/panicking.rs:217
[INFO] [stderr]     10:     0x55c44a317b73 - std::panicking::rust_panic_with_hook::h26a6ab8b0993c0c8
[INFO] [stderr]                                  at src/libstd/panicking.rs:526
[INFO] [stderr]     11:     0x55c44a126729 - std::panicking::begin_panic::hbc9a72efcf04098e
[INFO] [stderr]                                  at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/panicking.rs:456
[INFO] [stderr]     12:     0x55c44a0f53ec - build_script_build::LibrarySearcher::try_locate_hdf5_library::h89b275ea73914ed5
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549
[INFO] [stderr]     13:     0x55c44a0f6d71 - build_script_build::main::ha1d5a8ca73d770fc
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647
[INFO] [stderr]     14:     0x55c44a0fd3ab - std::rt::lang_start::{{closure}}::h9747807e19b2931a
[INFO] [stderr]                                  at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/rt.rs:67
[INFO] [stderr]     15:     0x55c44a317f43 - std::rt::lang_start_internal::{{closure}}::h84a998219831fa70
[INFO] [stderr]                                  at src/libstd/rt.rs:52
[INFO] [stderr]     16:     0x55c44a317f43 - std::panicking::try::do_call::he8e1d689a3e26def
[INFO] [stderr]                                  at src/libstd/panicking.rs:348
[INFO] [stderr]     17:     0x55c44a317f43 - std::panicking::try::h264b6eebc2fa7bbf
[INFO] [stderr]                                  at src/libstd/panicking.rs:325
[INFO] [stderr]     18:     0x55c44a317f43 - std::panic::catch_unwind::hbf28fafa723b2128
[INFO] [stderr]                                  at src/libstd/panic.rs:394
[INFO] [stderr]     19:     0x55c44a317f43 - std::rt::lang_start_internal::he959aa59bc3ec202
[INFO] [stderr]                                  at src/libstd/rt.rs:51
[INFO] [stderr]     20:     0x55c44a0fd387 - std::rt::lang_start::h44c2a66c83685f13
[INFO] [stderr]                                  at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/rt.rs:67
[INFO] [stderr]     21:     0x55c44a0f849a - main
[INFO] [stderr]     22:     0x7f8a4db4d0b3 - __libc_start_main
[INFO] [stderr]     23:     0x55c44a0f019e - _start
[INFO] [stderr]     24:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "ee120f0fa05e645048638330dc9c0a3b31fd553e6a307fbf85106b54b7fd0cc0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ee120f0fa05e645048638330dc9c0a3b31fd553e6a307fbf85106b54b7fd0cc0", kill_on_drop: false }`
[INFO] [stdout] ee120f0fa05e645048638330dc9c0a3b31fd553e6a307fbf85106b54b7fd0cc0
