[INFO] fetching crate flann 0.1.0...
[INFO] checking flann-0.1.0 against beta-2020-07-24 for pr-75494-beta
[INFO] extracting crate flann 0.1.0 into /workspace/builds/worker-4/source
[INFO] validating manifest of crates.io crate flann 0.1.0 on toolchain beta-2020-07-24
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate flann 0.1.0
[INFO] finished tweaking crates.io crate flann 0.1.0
[INFO] tweaked toml for crates.io crate flann 0.1.0 written to /workspace/builds/worker-4/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-07-24" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 28635ea3919ffb51035926220802d70937881e1b27a20de1c270505a8d3c080d
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "28635ea3919ffb51035926220802d70937881e1b27a20de1c270505a8d3c080d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "28635ea3919ffb51035926220802d70937881e1b27a20de1c270505a8d3c080d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "28635ea3919ffb51035926220802d70937881e1b27a20de1c270505a8d3c080d", kill_on_drop: false }`
[INFO] [stdout] 28635ea3919ffb51035926220802d70937881e1b27a20de1c270505a8d3c080d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-07-24" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 20e2090c857246a6f53474a20602483607c9c1173dce702343c434559bccf03f
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "20e2090c857246a6f53474a20602483607c9c1173dce702343c434559bccf03f", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling ucd-util v0.1.8
[INFO] [stderr]    Compiling proc-macro2 v1.0.19
[INFO] [stderr]    Compiling libloading v0.4.3
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling utf8-ranges v1.0.4
[INFO] [stderr]    Compiling bindgen v0.32.3
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]     Checking either v1.6.0
[INFO] [stderr]    Compiling proc-macro2 v0.2.3
[INFO] [stderr]    Compiling log v0.3.9
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]     Checking backtrace v0.3.50
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling quote v0.4.2
[INFO] [stderr]    Compiling clang-sys v0.21.2
[INFO] [stderr]    Compiling aho-corasick v0.6.10
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling syn v1.0.39
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling env_logger v0.4.3
[INFO] [stderr]    Compiling synstructure v0.12.4
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]     Checking failure v0.1.8
[INFO] [stderr]    Compiling flann-sys v0.1.0
[INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-7e6c278f8b4606c4/build-script-build` (exit code: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rustc-link-lib=gomp
[INFO] [stderr]   cargo:rustc-link-lib=stdc++
[INFO] [stderr]   running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-d91640f2fd46871b/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr]   -- The C compiler identification is GNU 9.3.0
[INFO] [stderr]   -- The CXX compiler identification is GNU 9.3.0
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc -- works
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ -- works
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- Found PythonInterp: /usr/bin/python (found version "2.7.18") 
[INFO] [stderr]   -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "")
[INFO] [stderr]   -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) 
[INFO] [stderr]   -- Found OpenMP_C: -fopenmp (found version "4.5") 
[INFO] [stderr]   -- Found OpenMP_CXX: -fopenmp (found version "4.5") 
[INFO] [stderr]   -- Found OpenMP: TRUE (found version "4.5")  
[INFO] [stderr]   -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-d91640f2fd46871b/out
[INFO] [stderr]   -- Build type: Debug
[INFO] [stderr]   -- Building C bindings: ON
[INFO] [stderr]   -- Building examples: OFF
[INFO] [stderr]   -- Building tests: OFF
[INFO] [stderr]   -- Building documentation: OFF
[INFO] [stderr]   -- Building python bindings: OFF
[INFO] [stderr]   -- Building matlab bindings: OFF
[INFO] [stderr]   -- Building CUDA library: OFF
[INFO] [stderr]   -- Using OpenMP support: ON
[INFO] [stderr]   -- Using MPI support: OFF
[INFO] [stderr]   -- Configuring incomplete, errors occurred!
[INFO] [stderr]   See also "/opt/rustwide/target/debug/build/flann-sys-d91640f2fd46871b/out/build/CMakeFiles/CMakeOutput.log".
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Warning at CMakeLists.txt:78 (message):
[INFO] [stderr]     hdf5 library not found, some tests will not be run
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Warning at CMakeLists.txt:117 (message):
[INFO] [stderr]     gtest library not found, some tests will not be run
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Error: Could not open file for write in copy operation /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann/src/cpp/flann/config.h.tmp
[INFO] [stderr]   CMake Error: : System Error: Read-only file system
[INFO] [stderr]   CMake Error at src/cpp/CMakeLists.txt:5 (configure_file):
[INFO] [stderr]     configure_file Problem configuring file
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at '
[INFO] [stderr]   command did not execute successfully, got: exit code: 1
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55fcdeed7375 - backtrace::backtrace::libunwind::trace::h5e2646fa3eddf2ea
[INFO] [stderr]                                  at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86
[INFO] [stderr]      1:     0x55fcdeed7375 - backtrace::backtrace::trace_unsynchronized::hb95dd7f77ce47877
[INFO] [stderr]                                  at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66
[INFO] [stderr]      2:     0x55fcdeed7375 - std::sys_common::backtrace::_print_fmt::h5e71b67af43fd70d
[INFO] [stderr]                                  at src/libstd/sys_common/backtrace.rs:78
[INFO] [stderr]      3:     0x55fcdeed7375 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::hdb4a83d2b61107e5
[INFO] [stderr]                                  at src/libstd/sys_common/backtrace.rs:59
[INFO] [stderr]      4:     0x55fcdef0228c - core::fmt::write::ha20e7262fa3e8a7a
[INFO] [stderr]                                  at src/libcore/fmt/mod.rs:1076
[INFO] [stderr]      5:     0x55fcdeed3482 - std::io::Write::write_fmt::h1aebfe8a5a79e36d
[INFO] [stderr]                                  at src/libstd/io/mod.rs:1537
[INFO] [stderr]      6:     0x55fcdeeda090 - std::sys_common::backtrace::_print::h9c07314cc66ba539
[INFO] [stderr]                                  at src/libstd/sys_common/backtrace.rs:62
[INFO] [stderr]      7:     0x55fcdeeda090 - std::sys_common::backtrace::print::hd1fd65f49a2d8544
[INFO] [stderr]                                  at src/libstd/sys_common/backtrace.rs:49
[INFO] [stderr]      8:     0x55fcdeeda090 - std::panicking::default_hook::{{closure}}::h222da46485ab36fc
[INFO] [stderr]                                  at src/libstd/panicking.rs:198
[INFO] [stderr]      9:     0x55fcdeed9ddc - std::panicking::default_hook::hc5868949d129ed00
[INFO] [stderr]                                  at src/libstd/panicking.rs:217
[INFO] [stderr]     10:     0x55fcdeeda6d3 - std::panicking::rust_panic_with_hook::h26a6ab8b0993c0c8
[INFO] [stderr]                                  at src/libstd/panicking.rs:526
[INFO] [stderr]     11:     0x55fcdeeda2cb - rust_begin_unwind
[INFO] [stderr]                                  at src/libstd/panicking.rs:437
[INFO] [stderr]     12:     0x55fcdeeda23b - std::panicking::begin_panic_fmt::h2ff295231415d4a6
[INFO] [stderr]                                  at src/libstd/panicking.rs:391
[INFO] [stderr]     13:     0x55fcde9a6497 - cmake::fail::hf0f3f19e1ff44c4b
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885
[INFO] [stderr]     14:     0x55fcde9a5dde - cmake::run::hbfa9e03c3139de5a
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863
[INFO] [stderr]     15:     0x55fcde9a1797 - cmake::Config::build::h91a3fd6d1f201449
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:698
[INFO] [stderr]     16:     0x55fcde99c4e6 - build_script_build::main::hd1f5921bc586499c
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/build.rs:30
[INFO] [stderr]     17:     0x55fcde99e90b - std::rt::lang_start::{{closure}}::h0ed8542f37e0d6c7
[INFO] [stderr]                                  at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/rt.rs:67
[INFO] [stderr]     18:     0x55fcdeedaaa3 - std::rt::lang_start_internal::{{closure}}::h84a998219831fa70
[INFO] [stderr]                                  at src/libstd/rt.rs:52
[INFO] [stderr]     19:     0x55fcdeedaaa3 - std::panicking::try::do_call::he8e1d689a3e26def
[INFO] [stderr]                                  at src/libstd/panicking.rs:348
[INFO] [stderr]     20:     0x55fcdeedaaa3 - std::panicking::try::h264b6eebc2fa7bbf
[INFO] [stderr]                                  at src/libstd/panicking.rs:325
[INFO] [stderr]     21:     0x55fcdeedaaa3 - std::panic::catch_unwind::hbf28fafa723b2128
[INFO] [stderr]                                  at src/libstd/panic.rs:394
[INFO] [stderr]     22:     0x55fcdeedaaa3 - std::rt::lang_start_internal::he959aa59bc3ec202
[INFO] [stderr]                                  at src/libstd/rt.rs:51
[INFO] [stderr]     23:     0x55fcde99e8e7 - std::rt::lang_start::he1f4fefb13ae03bc
[INFO] [stderr]                                  at /rustc/6f959902b3103c49ca981fbc01871589c3498489/src/libstd/rt.rs:67
[INFO] [stderr]     24:     0x55fcde99c8ea - main
[INFO] [stderr]     25:     0x7fa8aebae0b3 - __libc_start_main
[INFO] [stderr]     26:     0x55fcde99c19e - _start
[INFO] [stderr]     27:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "20e2090c857246a6f53474a20602483607c9c1173dce702343c434559bccf03f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "20e2090c857246a6f53474a20602483607c9c1173dce702343c434559bccf03f", kill_on_drop: false }`
[INFO] [stdout] 20e2090c857246a6f53474a20602483607c9c1173dce702343c434559bccf03f
