[INFO] fetching crate bio-jtools 2020.6.11...
[INFO] checking bio-jtools-2020.6.11 against master#119d2a1a98fe87d4ae6cabf12134a0ef2fb95851 for pr-75180
[INFO] extracting crate bio-jtools 2020.6.11 into /workspace/builds/worker-12/source
[INFO] validating manifest of crates.io crate bio-jtools 2020.6.11 on toolchain 119d2a1a98fe87d4ae6cabf12134a0ef2fb95851
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+119d2a1a98fe87d4ae6cabf12134a0ef2fb95851" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bio-jtools 2020.6.11
[INFO] finished tweaking crates.io crate bio-jtools 2020.6.11
[INFO] tweaked toml for crates.io crate bio-jtools 2020.6.11 written to /workspace/builds/worker-12/source/Cargo.toml
[INFO] crate crates.io crate bio-jtools 2020.6.11 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+119d2a1a98fe87d4ae6cabf12134a0ef2fb95851" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+119d2a1a98fe87d4ae6cabf12134a0ef2fb95851" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c2f3d6da4b769a0c8c438ba5462a75fb0072e0aaf7176c0e35e8540edc50cd4c
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "c2f3d6da4b769a0c8c438ba5462a75fb0072e0aaf7176c0e35e8540edc50cd4c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c2f3d6da4b769a0c8c438ba5462a75fb0072e0aaf7176c0e35e8540edc50cd4c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c2f3d6da4b769a0c8c438ba5462a75fb0072e0aaf7176c0e35e8540edc50cd4c", kill_on_drop: false }`
[INFO] [stdout] c2f3d6da4b769a0c8c438ba5462a75fb0072e0aaf7176c0e35e8540edc50cd4c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+119d2a1a98fe87d4ae6cabf12134a0ef2fb95851" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 9e5023eb58b7dc73f75656dd963b38a8a824e2777ab0d36aab7cb97679a09323
[INFO] running `Command { std: "docker" "start" "-a" "9e5023eb58b7dc73f75656dd963b38a8a824e2777ab0d36aab7cb97679a09323", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.8
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling cc v1.0.50
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling syn v1.0.14
[INFO] [stderr]    Compiling memchr v2.3.0
[INFO] [stderr]    Compiling pkg-config v0.3.17
[INFO] [stderr]    Compiling doc-comment v0.3.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ndarray v0.13.0
[INFO] [stderr]     Checking itoa v0.4.5
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]     Checking regex-syntax v0.6.18
[INFO] [stderr]     Checking unicode-width v0.1.7
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]     Checking bit-vec v0.5.1
[INFO] [stderr]    Compiling bio v0.30.0
[INFO] [stderr]     Checking fnv v1.0.6
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking strum v0.16.0
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking rust-lapper v0.4.4
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking miniz_oxide v0.3.6
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking crc32fast v1.2.0
[INFO] [stderr]    Compiling bv v0.11.0
[INFO] [stderr]     Checking bit-set v0.5.1
[INFO] [stderr]     Checking rand_os v0.1.3
[INFO] [stderr]     Checking dirs v1.0.5
[INFO] [stderr]     Checking regex-automata v0.1.8
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking rand v0.6.5
[INFO] [stderr]     Checking term v0.5.2
[INFO] [stderr]     Checking flate2 v1.0.13
[INFO] [stderr]     Checking csv-core v0.1.6
[INFO] [stderr]     Checking aho-corasick v0.7.8
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling backtrace-sys v0.1.32
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling bzip2-sys v0.1.8+1.0.8
[INFO] [stderr]     Checking xz2 v0.1.6
[INFO] [stderr]     Checking statrs v0.11.0
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]     Checking bzip2 v0.3.3
[INFO] [stderr]     Checking backtrace v0.3.43
[INFO] [stderr]     Checking needletail v0.3.2
[INFO] [stderr]     Checking chrono v0.4.11
[INFO] [stderr]    Compiling serde_derive v1.0.104
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]     Checking snafu v0.5.0
[INFO] [stderr]     Checking serde v1.0.104
[INFO] [stderr]     Checking bstr v0.2.11
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking bio-types v0.5.1
[INFO] [stderr]     Checking clap v2.33.0
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking prettytable-rs v0.8.0
[INFO] [stderr]     Checking bio-jtools v2020.6.11 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `o`
[INFO] [stdout]    --> src/main.rs:174:24
[INFO] [stdout]     |
[INFO] [stdout] 174 |     } else if let Some(o) = _matches.subcommand_matches("kspec") {
[INFO] [stdout]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `o`
[INFO] [stdout]    --> src/main.rs:176:24
[INFO] [stdout]     |
[INFO] [stdout] 176 |     } else if let Some(o) = _matches.subcommand_matches("filter") {
[INFO] [stdout]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seqtype`
[INFO] [stdout]    --> src/data/mod.rs:290:31
[INFO] [stdout]     |
[INFO] [stdout] 290 | pub fn organize(indir: &Path, seqtype: &str, dryrun: bool, verbose: bool) {
[INFO] [stdout]     |                               ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seqtype`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `o`
[INFO] [stdout]    --> src/main.rs:174:24
[INFO] [stdout]     |
[INFO] [stdout] 174 |     } else if let Some(o) = _matches.subcommand_matches("kspec") {
[INFO] [stdout]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `o`
[INFO] [stdout]    --> src/main.rs:176:24
[INFO] [stdout]     |
[INFO] [stdout] 176 |     } else if let Some(o) = _matches.subcommand_matches("filter") {
[INFO] [stdout]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seqtype`
[INFO] [stdout]    --> src/data/mod.rs:290:31
[INFO] [stdout]     |
[INFO] [stdout] 290 | pub fn organize(indir: &Path, seqtype: &str, dryrun: bool, verbose: bool) {
[INFO] [stdout]     |                               ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seqtype`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 29s
[INFO] running `Command { std: "docker" "inspect" "9e5023eb58b7dc73f75656dd963b38a8a824e2777ab0d36aab7cb97679a09323", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9e5023eb58b7dc73f75656dd963b38a8a824e2777ab0d36aab7cb97679a09323", kill_on_drop: false }`
[INFO] [stdout] 9e5023eb58b7dc73f75656dd963b38a8a824e2777ab0d36aab7cb97679a09323