[INFO] fetching crate rnafamprob 0.1.0... [INFO] checking rnafamprob-0.1.0 against try#d990716b6a1fdde1300748828a9c9e79dfd0b898 for pr-74846 [INFO] extracting crate rnafamprob 0.1.0 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate rnafamprob 0.1.0 on toolchain d990716b6a1fdde1300748828a9c9e79dfd0b898 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d990716b6a1fdde1300748828a9c9e79dfd0b898" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate rnafamprob 0.1.0 [INFO] finished tweaking crates.io crate rnafamprob 0.1.0 [INFO] tweaked toml for crates.io crate rnafamprob 0.1.0 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate crates.io crate rnafamprob 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d990716b6a1fdde1300748828a9c9e79dfd0b898" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bio-seq-algos v0.1.12 [INFO] [stderr] Downloaded rna-algos v0.1.10 [INFO] [stderr] Downloaded rna-ss-params v0.1.13 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+d990716b6a1fdde1300748828a9c9e79dfd0b898" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] b0963a9d679458829305cf3b0c29285157b7db5320a166bd7f8e487c5ae0f886 [INFO] running `Command { std: "docker" "start" "-a" "b0963a9d679458829305cf3b0c29285157b7db5320a166bd7f8e487c5ae0f886", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b0963a9d679458829305cf3b0c29285157b7db5320a166bd7f8e487c5ae0f886", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b0963a9d679458829305cf3b0c29285157b7db5320a166bd7f8e487c5ae0f886", kill_on_drop: false }` [INFO] [stdout] b0963a9d679458829305cf3b0c29285157b7db5320a166bd7f8e487c5ae0f886 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+d990716b6a1fdde1300748828a9c9e79dfd0b898" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a7aeb110059a628b1636600174785fc1cc48b929ddb2f59dfe93dd37cbe36195 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a7aeb110059a628b1636600174785fc1cc48b929ddb2f59dfe93dd37cbe36195", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.5 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Checking void v1.0.2 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Checking bit-vec v0.4.4 [INFO] [stderr] Checking itoa v0.4.4 [INFO] [stderr] Checking unicode-width v0.1.6 [INFO] [stderr] Checking approx v0.1.1 [INFO] [stderr] Checking bytecount v0.3.2 [INFO] [stderr] Checking scoped_threadpool v0.1.9 [INFO] [stderr] Checking bio-seq-algos v0.1.12 [INFO] [stderr] Checking unreachable v1.0.0 [INFO] [stderr] Checking getopts v0.2.21 [INFO] [stderr] Checking byteorder v1.3.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Checking itertools v0.6.5 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking num_cpus v1.10.1 [INFO] [stderr] Checking time v0.1.42 [INFO] [stderr] Checking bit-set v0.4.0 [INFO] [stderr] Checking rna-ss-params v0.1.13 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Checking regex-automata v0.1.8 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Checking csv-core v0.1.6 [INFO] [stderr] Checking aho-corasick v0.6.10 [INFO] [stderr] Checking regex v0.2.11 [INFO] [stderr] Checking num-traits v0.1.43 [INFO] [stderr] Checking num-complex v0.1.43 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v0.5.2 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Checking bstr v0.2.8 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking csv v1.1.1 [INFO] [stderr] Checking bio v0.20.3 [INFO] [stderr] Checking rna-algos v0.1.10 [INFO] [stderr] Checking rnafamprob v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/lib.rs:1279:152 [INFO] [stdout] | [INFO] [stdout] 1279 | ...[&pos_pair_2] + sta_fe_params.extending_gap_penalty;; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/utils.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / lazy_static! { [INFO] [stdout] 27 | | pub static ref RIBOSUM_85_60_BA_SCORE_MAT: BaScoreMat = { [INFO] [stdout] 28 | | [ [INFO] [stdout] 29 | | (AA, 2.22), (AC, -1.86), (AG, -1.46), (AU, -1.39), [INFO] [stdout] ... | [INFO] [stdout] 44 | | }; [INFO] [stdout] 45 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 59.27s [INFO] running `Command { std: "docker" "inspect" "a7aeb110059a628b1636600174785fc1cc48b929ddb2f59dfe93dd37cbe36195", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a7aeb110059a628b1636600174785fc1cc48b929ddb2f59dfe93dd37cbe36195", kill_on_drop: false }` [INFO] [stdout] a7aeb110059a628b1636600174785fc1cc48b929ddb2f59dfe93dd37cbe36195