[INFO] fetching crate hdf5 0.6.1... [INFO] checking hdf5-0.6.1 against master#7b3a7819371cef92a187e9bac8f7810ccde15216 for pr-74846 [INFO] extracting crate hdf5 0.6.1 into /workspace/builds/worker-13/source [INFO] validating manifest of crates.io crate hdf5 0.6.1 on toolchain 7b3a7819371cef92a187e9bac8f7810ccde15216 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7b3a7819371cef92a187e9bac8f7810ccde15216" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.6.1 [INFO] finished tweaking crates.io crate hdf5 0.6.1 [INFO] tweaked toml for crates.io crate hdf5 0.6.1 written to /workspace/builds/worker-13/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+7b3a7819371cef92a187e9bac8f7810ccde15216" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+7b3a7819371cef92a187e9bac8f7810ccde15216" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 32b36092c39acfc7ced6cfee3563b4d62161d0771162aba94f772080884887ce [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "32b36092c39acfc7ced6cfee3563b4d62161d0771162aba94f772080884887ce", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "32b36092c39acfc7ced6cfee3563b4d62161d0771162aba94f772080884887ce", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "32b36092c39acfc7ced6cfee3563b4d62161d0771162aba94f772080884887ce", kill_on_drop: false }` [INFO] [stdout] 32b36092c39acfc7ced6cfee3563b4d62161d0771162aba94f772080884887ce [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+7b3a7819371cef92a187e9bac8f7810ccde15216" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 241c96aeac74260d17b220cc3a2e9bca06800ea29bfd5b0fc1ef00250b6f9dc5 [INFO] running `Command { std: "docker" "start" "-a" "241c96aeac74260d17b220cc3a2e9bca06800ea29bfd5b0fc1ef00250b6f9dc5", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking smallvec v1.3.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking remove_dir_all v0.5.2 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Checking parking_lot_core v0.7.1 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking hdf5-types v0.6.1 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Checking regex v1.3.6 [INFO] [stderr] Checking mashup v0.1.9 [INFO] [stderr] Compiling hdf5-sys v0.6.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-90f7409fef6938a9/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55621504ea35 - backtrace::backtrace::libunwind::trace::hdc42e81315d2a69f [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55621504ea35 - backtrace::backtrace::trace_unsynchronized::hc9edcf4d4fb0b42d [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55621504ea35 - std::sys_common::backtrace::_print_fmt::hb93b171b1042fa52 [INFO] [stderr] at library/std/src/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55621504ea35 - ::fmt::h589f1bf1cf74dd71 [INFO] [stderr] at library/std/src/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x556215071f0c - core::fmt::write::h3a043650ba7bf668 [INFO] [stderr] at library/core/src/fmt/mod.rs:1117 [INFO] [stderr] 5: 0x55621504b742 - std::io::Write::write_fmt::hbbad3ca30e02a58a [INFO] [stderr] at library/std/src/io/mod.rs:1510 [INFO] [stderr] 6: 0x556215050f50 - std::sys_common::backtrace::_print::h96b2d71887f0b186 [INFO] [stderr] at library/std/src/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x556215050f50 - std::sys_common::backtrace::print::h6cd6e92e674a16a4 [INFO] [stderr] at library/std/src/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x556215050f50 - std::panicking::default_hook::{{closure}}::h76820e280a7c9f14 [INFO] [stderr] at library/std/src/panicking.rs:198 [INFO] [stderr] 9: 0x556215050c9c - std::panicking::default_hook::h3c589b4200c4e9d0 [INFO] [stderr] at library/std/src/panicking.rs:217 [INFO] [stderr] 10: 0x556215051593 - std::panicking::rust_panic_with_hook::h99205632f2cac760 [INFO] [stderr] at library/std/src/panicking.rs:526 [INFO] [stderr] 11: 0x556214e612c9 - std::panicking::begin_panic::hcbde168ab7f2bbf9 [INFO] [stderr] at /rustc/7b3a7819371cef92a187e9bac8f7810ccde15216/library/std/src/panicking.rs:456 [INFO] [stderr] 12: 0x556214e314cc - build_script_build::LibrarySearcher::try_locate_hdf5_library::h26c2249f5cd6d262 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523 [INFO] [stderr] 13: 0x556214e3287c - build_script_build::main::h8aa449418a2dc3dd [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:601 [INFO] [stderr] 14: 0x556214e3d1ab - std::rt::lang_start::{{closure}}::h272fd1488faca6f6 [INFO] [stderr] at /rustc/7b3a7819371cef92a187e9bac8f7810ccde15216/library/std/src/rt.rs:67 [INFO] [stderr] 15: 0x556215051963 - std::rt::lang_start_internal::{{closure}}::hb14aa68a79b4eb09 [INFO] [stderr] at library/std/src/rt.rs:52 [INFO] [stderr] 16: 0x556215051963 - std::panicking::try::do_call::haffb1227d43d77f1 [INFO] [stderr] at library/std/src/panicking.rs:348 [INFO] [stderr] 17: 0x556215051963 - std::panicking::try::hc085bbb3f48e6fb0 [INFO] [stderr] at library/std/src/panicking.rs:325 [INFO] [stderr] 18: 0x556215051963 - std::panic::catch_unwind::h0d91c438fed06f5e [INFO] [stderr] at library/std/src/panic.rs:394 [INFO] [stderr] 19: 0x556215051963 - std::rt::lang_start_internal::h9a2f79aa5e187e95 [INFO] [stderr] at library/std/src/rt.rs:51 [INFO] [stderr] 20: 0x556214e3d187 - std::rt::lang_start::h06f51639c029659d [INFO] [stderr] at /rustc/7b3a7819371cef92a187e9bac8f7810ccde15216/library/std/src/rt.rs:67 [INFO] [stderr] 21: 0x556214e3332a - main [INFO] [stderr] 22: 0x7f45813b10b3 - __libc_start_main [INFO] [stderr] 23: 0x556214e2d19e - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "241c96aeac74260d17b220cc3a2e9bca06800ea29bfd5b0fc1ef00250b6f9dc5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "241c96aeac74260d17b220cc3a2e9bca06800ea29bfd5b0fc1ef00250b6f9dc5", kill_on_drop: false }` [INFO] [stdout] 241c96aeac74260d17b220cc3a2e9bca06800ea29bfd5b0fc1ef00250b6f9dc5