[INFO] crate flann-sys 0.1.0 is already in cache [INFO] checking flann-sys-0.1.0 against try#22dd2dd1dc07f63ae9394352d412f020d2985684 for pr-74627 [INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain 22dd2dd1dc07f63ae9394352d412f020d2985684 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+22dd2dd1dc07f63ae9394352d412f020d2985684" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann-sys 0.1.0 [INFO] finished tweaking crates.io crate flann-sys 0.1.0 [INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+22dd2dd1dc07f63ae9394352d412f020d2985684" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+22dd2dd1dc07f63ae9394352d412f020d2985684" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+22dd2dd1dc07f63ae9394352d412f020d2985684" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 62d57db7920f94b7bab83adf507da653eaf15e3222847b76bd3a3b4b0f29cddc [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "62d57db7920f94b7bab83adf507da653eaf15e3222847b76bd3a3b4b0f29cddc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "62d57db7920f94b7bab83adf507da653eaf15e3222847b76bd3a3b4b0f29cddc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "62d57db7920f94b7bab83adf507da653eaf15e3222847b76bd3a3b4b0f29cddc", kill_on_drop: false }` [INFO] [stdout] 62d57db7920f94b7bab83adf507da653eaf15e3222847b76bd3a3b4b0f29cddc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+22dd2dd1dc07f63ae9394352d412f020d2985684" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 672b96d054b2b6478de4f18a97b7a8b821ff6cc20bdd9e0bc6983d102b49ec45 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "672b96d054b2b6478de4f18a97b7a8b821ff6cc20bdd9e0bc6983d102b49ec45", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.73 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling cc v1.0.58 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling flann-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-279e69beec0a0727/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-a94414fd626189c5/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-a94414fd626189c5/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-a94414fd626189c5/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5580d6ba011f - std::backtrace_rs::backtrace::libunwind::trace::h8864605b5c3dbe2c [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/../backtrace/src/backtrace/libunwind.rs:96 [INFO] [stderr] 1: 0x5580d6ba011f - std::backtrace_rs::backtrace::trace_unsynchronized::h1f622efed412f077 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/../backtrace/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x5580d6ba011f - std::sys_common::backtrace::_print_fmt::h8e17da323f21cc2b [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/sys_common/backtrace.rs:77 [INFO] [stderr] 3: 0x5580d6ba011f - ::fmt::hd4a7293426badf40 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/sys_common/backtrace.rs:58 [INFO] [stderr] 4: 0x5580d6bc6efc - core::fmt::write::hfbd2baad61ed21a8 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libcore/fmt/mod.rs:1117 [INFO] [stderr] 5: 0x5580d6b9c212 - std::io::Write::write_fmt::h54828fb1bd41a052 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/io/mod.rs:1508 [INFO] [stderr] 6: 0x5580d6ba2f00 - std::sys_common::backtrace::_print::h6ba0300926b9fb58 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/sys_common/backtrace.rs:61 [INFO] [stderr] 7: 0x5580d6ba2f00 - std::sys_common::backtrace::print::hd11f0188385cb859 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/sys_common/backtrace.rs:48 [INFO] [stderr] 8: 0x5580d6ba2f00 - std::panicking::default_hook::{{closure}}::h57b45fcdc30fe8e4 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x5580d6ba2c4c - std::panicking::default_hook::h067cd795bad37ff3 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/panicking.rs:217 [INFO] [stderr] 10: 0x5580d6ba3543 - std::panicking::rust_panic_with_hook::hd1b93581b69959be [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/panicking.rs:526 [INFO] [stderr] 11: 0x5580d6ba313b - rust_begin_unwind [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/panicking.rs:437 [INFO] [stderr] 12: 0x5580d6ba30ab - std::panicking::begin_panic_fmt::hd7b4db41404cedf0 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/panicking.rs:391 [INFO] [stderr] 13: 0x5580d66733c7 - cmake::fail::h1d4028343c85801b [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885 [INFO] [stderr] 14: 0x5580d6672d0e - cmake::run::h95498bc787368642 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863 [INFO] [stderr] 15: 0x5580d666e6c7 - cmake::Config::build::h2001efab5caaf1cf [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:698 [INFO] [stderr] 16: 0x5580d6669416 - build_script_build::main::hce80a684a02fe634 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:30 [INFO] [stderr] 17: 0x5580d666b83b - std::rt::lang_start::{{closure}}::hae34c2f454490f87 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/rt.rs:67 [INFO] [stderr] 18: 0x5580d6ba3913 - std::rt::lang_start_internal::{{closure}}::h9a7ec4d0a4846786 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/rt.rs:52 [INFO] [stderr] 19: 0x5580d6ba3913 - std::panicking::try::do_call::h31d9073533c95062 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/panicking.rs:348 [INFO] [stderr] 20: 0x5580d6ba3913 - std::panicking::try::h9be90170880ba1d0 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/panicking.rs:325 [INFO] [stderr] 21: 0x5580d6ba3913 - std::panic::catch_unwind::hba3ee29aa4d47586 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/panic.rs:394 [INFO] [stderr] 22: 0x5580d6ba3913 - std::rt::lang_start_internal::h90880417661a7eb6 [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/rt.rs:51 [INFO] [stderr] 23: 0x5580d666b817 - std::rt::lang_start::h6ef0e19464157f5f [INFO] [stderr] at /rustc/22dd2dd1dc07f63ae9394352d412f020d2985684/src/libstd/rt.rs:67 [INFO] [stderr] 24: 0x5580d666981a - main [INFO] [stderr] 25: 0x7ff3938440b3 - __libc_start_main [INFO] [stderr] 26: 0x5580d66690ce - _start [INFO] [stderr] 27: 0x0 - [INFO] running `Command { std: "docker" "inspect" "672b96d054b2b6478de4f18a97b7a8b821ff6cc20bdd9e0bc6983d102b49ec45", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "672b96d054b2b6478de4f18a97b7a8b821ff6cc20bdd9e0bc6983d102b49ec45", kill_on_drop: false }` [INFO] [stdout] 672b96d054b2b6478de4f18a97b7a8b821ff6cc20bdd9e0bc6983d102b49ec45