[INFO] crate libprosic 0.7.3 is already in cache [INFO] testing libprosic-0.7.3 against try#03a1ea71b075ab964b5278bc6e74cd6c52c36ee0 for pr-74409 [INFO] extracting crate libprosic 0.7.3 into /workspace/builds/worker-8/source [INFO] validating manifest of crates.io crate libprosic 0.7.3 on toolchain 03a1ea71b075ab964b5278bc6e74cd6c52c36ee0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate libprosic 0.7.3 [INFO] finished tweaking crates.io crate libprosic 0.7.3 [INFO] tweaked toml for crates.io crate libprosic 0.7.3 written to /workspace/builds/worker-8/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2d67b4a2c33820dde5a67f9973e2e81473034e71d3842705b12c3cadd6f36803 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "2d67b4a2c33820dde5a67f9973e2e81473034e71d3842705b12c3cadd6f36803", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2d67b4a2c33820dde5a67f9973e2e81473034e71d3842705b12c3cadd6f36803", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2d67b4a2c33820dde5a67f9973e2e81473034e71d3842705b12c3cadd6f36803", kill_on_drop: false }` [INFO] [stdout] 2d67b4a2c33820dde5a67f9973e2e81473034e71d3842705b12c3cadd6f36803 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e4be43d371545a9dfcbd393e2c852b5b1aa93293869897f49b9747082c9017e9 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e4be43d371545a9dfcbd393e2c852b5b1aa93293869897f49b9747082c9017e9", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling libc v0.2.73 [INFO] [stderr] Compiling serde_derive v1.0.114 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling bindgen v0.36.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling tinyvec v0.3.3 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling bio v0.24.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling percent-encoding v1.0.1 [INFO] [stderr] Compiling itoa v0.4.6 [INFO] [stderr] Compiling ndarray v0.6.10 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling bitflags v0.9.1 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling c_vec v1.0.12 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling cached v0.7.0 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling GSL v1.1.0 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling itertools v0.5.10 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling proc-macro2 v0.3.5 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling unicode-normalization v0.1.13 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling num-iter v0.1.41 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling clang-sys v0.22.0 [INFO] [stderr] Compiling quote v0.5.2 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling syn v1.0.35 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling idna v0.1.5 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling ordered-float v1.1.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling url v1.7.2 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling num v0.1.42 [INFO] [stderr] Compiling rulinalg v0.2.2 [INFO] [stderr] Compiling rusty-machine v0.4.4 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling serde v1.0.114 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling bio-types v0.7.0 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling rust-htslib v0.22.0 [INFO] [stderr] Compiling libprosic v0.7.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/call/pairwise.rs:62:20 [INFO] [stdout] | [INFO] [stdout] 62 | let variants = try!(utils::collect_variants( [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/call/pairwise.rs:70:21 [INFO] [stdout] | [INFO] [stdout] 70 | let chrom_seq = try!(reference_buffer.seq(&chrom)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/call/pairwise.rs:75:18 [INFO] [stdout] | [INFO] [stdout] 75 | Some(try!(joint_model.pileup( [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/call/pairwise.rs:159:26 [INFO] [stdout] | [INFO] [stdout] 159 | let mut writer = try!(csv::WriterBuilder::new() [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/model/sample.rs:76:17 [INFO] [stdout] | [INFO] [stdout] 76 | try!(self.reader.fetch(tid, window_start, end)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/call/pairwise.rs:55:62 [INFO] [stdout] | [INFO] [stdout] 55 | ) -> Result>>, Box> [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/call/pairwise.rs:116:21 [INFO] [stdout] | [INFO] [stdout] 116 | ) -> Result<(), Box> [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/estimation/alignment_properties.rs:40:68 [INFO] [stdout] | [INFO] [stdout] 40 | pub fn estimate(bam: &mut R) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/estimation/alignment_properties.rs:142:33 [INFO] [stdout] | [INFO] [stdout] 142 | ) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/estimation/fdr/ev.rs:35:21 [INFO] [stdout] | [INFO] [stdout] 35 | ) -> Result<(), Box> [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/fragments.rs:52:89 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/fragments.rs:56:68 [INFO] [stdout] | [INFO] [stdout] 56 | let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/fragments.rs:120:41 [INFO] [stdout] | [INFO] [stdout] 120 | ) -> Result<(LogProb, LogProb), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/reads.rs:30:49 [INFO] [stdout] | [INFO] [stdout] 30 | ) -> Result, Box>; [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/reads.rs:56:49 [INFO] [stdout] | [INFO] [stdout] 56 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/reads.rs:101:49 [INFO] [stdout] | [INFO] [stdout] 101 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/reads.rs:169:49 [INFO] [stdout] | [INFO] [stdout] 169 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:68:82 [INFO] [stdout] | [INFO] [stdout] 68 | pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:220:39 [INFO] [stdout] | [INFO] [stdout] 220 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:362:42 [INFO] [stdout] | [INFO] [stdout] 362 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:363:34 [INFO] [stdout] | [INFO] [stdout] 363 | let mut evidence: RefMut = match variant { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:409:42 [INFO] [stdout] | [INFO] [stdout] 409 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:412:44 [INFO] [stdout] | [INFO] [stdout] 412 | -> Result<(LogProb, LogProb), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/mod.rs:275:41 [INFO] [stdout] | [INFO] [stdout] 275 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/mod.rs:416:42 [INFO] [stdout] | [INFO] [stdout] 416 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:27:46 [INFO] [stdout] | [INFO] [stdout] 27 | ) -> Result>, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:204:62 [INFO] [stdout] | [INFO] [stdout] 204 | pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:232:39 [INFO] [stdout] | [INFO] [stdout] 232 | ) -> Result>, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:276:35 [INFO] [stdout] | [INFO] [stdout] 276 | ) -> Result>, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:317:21 [INFO] [stdout] | [INFO] [stdout] 317 | ) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:367:30 [INFO] [stdout] | [INFO] [stdout] 367 | ) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/model/evidence/reads.rs:335:1 [INFO] [stdout] | [INFO] [stdout] 335 | / lazy_static! { [INFO] [stdout] 336 | | static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333)); [INFO] [stdout] 337 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/model/priors/single_cell_bulk.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / cached! { [INFO] [stdout] 27 | | AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new(); [INFO] [stdout] 28 | | // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E) [INFO] [stdout] 29 | | // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand [INFO] [stdout] ... | [INFO] [stdout] 96 | | } [INFO] [stdout] 97 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 33 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 02s [INFO] running `Command { std: "docker" "inspect" "e4be43d371545a9dfcbd393e2c852b5b1aa93293869897f49b9747082c9017e9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e4be43d371545a9dfcbd393e2c852b5b1aa93293869897f49b9747082c9017e9", kill_on_drop: false }` [INFO] [stdout] e4be43d371545a9dfcbd393e2c852b5b1aa93293869897f49b9747082c9017e9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] de67c623ef4e7ea3012b92adb5831c481b0213bf554009252937c0b52d3a46ca [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "de67c623ef4e7ea3012b92adb5831c481b0213bf554009252937c0b52d3a46ca", kill_on_drop: false }` [INFO] [stderr] Compiling winapi-build v0.1.1 [INFO] [stderr] Compiling winapi v0.2.8 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling utf8-ranges v0.1.3 [INFO] [stderr] Compiling regex-syntax v0.3.9 [INFO] [stderr] Compiling traitobject v0.1.0 [INFO] [stderr] Compiling typeable v0.1.2 [INFO] [stderr] Compiling miniz-sys v0.1.12 [INFO] [stderr] Compiling memchr v0.1.11 [INFO] [stderr] Compiling time v0.1.43 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling mime v0.2.6 [INFO] [stderr] Compiling fern v0.4.4 [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/call/pairwise.rs:62:20 [INFO] [stdout] | [INFO] [stdout] 62 | let variants = try!(utils::collect_variants( [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/call/pairwise.rs:70:21 [INFO] [stdout] | [INFO] [stdout] 70 | let chrom_seq = try!(reference_buffer.seq(&chrom)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/call/pairwise.rs:75:18 [INFO] [stdout] | [INFO] [stdout] 75 | Some(try!(joint_model.pileup( [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/call/pairwise.rs:159:26 [INFO] [stdout] | [INFO] [stdout] 159 | let mut writer = try!(csv::WriterBuilder::new() [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/model/sample.rs:76:17 [INFO] [stdout] | [INFO] [stdout] 76 | try!(self.reader.fetch(tid, window_start, end)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/call/pairwise.rs:55:62 [INFO] [stdout] | [INFO] [stdout] 55 | ) -> Result>>, Box> [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/call/pairwise.rs:116:21 [INFO] [stdout] | [INFO] [stdout] 116 | ) -> Result<(), Box> [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/estimation/alignment_properties.rs:40:68 [INFO] [stdout] | [INFO] [stdout] 40 | pub fn estimate(bam: &mut R) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/estimation/alignment_properties.rs:142:33 [INFO] [stdout] | [INFO] [stdout] 142 | ) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/estimation/fdr/ev.rs:35:21 [INFO] [stdout] | [INFO] [stdout] 35 | ) -> Result<(), Box> [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/fragments.rs:52:89 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/fragments.rs:56:68 [INFO] [stdout] | [INFO] [stdout] 56 | let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/fragments.rs:120:41 [INFO] [stdout] | [INFO] [stdout] 120 | ) -> Result<(LogProb, LogProb), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/reads.rs:30:49 [INFO] [stdout] | [INFO] [stdout] 30 | ) -> Result, Box>; [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/reads.rs:56:49 [INFO] [stdout] | [INFO] [stdout] 56 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/reads.rs:101:49 [INFO] [stdout] | [INFO] [stdout] 101 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/reads.rs:169:49 [INFO] [stdout] | [INFO] [stdout] 169 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:68:82 [INFO] [stdout] | [INFO] [stdout] 68 | pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:220:39 [INFO] [stdout] | [INFO] [stdout] 220 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:362:42 [INFO] [stdout] | [INFO] [stdout] 362 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:363:34 [INFO] [stdout] | [INFO] [stdout] 363 | let mut evidence: RefMut = match variant { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:409:42 [INFO] [stdout] | [INFO] [stdout] 409 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:412:44 [INFO] [stdout] | [INFO] [stdout] 412 | -> Result<(LogProb, LogProb), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/mod.rs:275:41 [INFO] [stdout] | [INFO] [stdout] 275 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/mod.rs:416:42 [INFO] [stdout] | [INFO] [stdout] 416 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:27:46 [INFO] [stdout] | [INFO] [stdout] 27 | ) -> Result>, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:204:62 [INFO] [stdout] | [INFO] [stdout] 204 | pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:232:39 [INFO] [stdout] | [INFO] [stdout] 232 | ) -> Result>, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:276:35 [INFO] [stdout] | [INFO] [stdout] 276 | ) -> Result>, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:317:21 [INFO] [stdout] | [INFO] [stdout] 317 | ) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:367:30 [INFO] [stdout] | [INFO] [stdout] 367 | ) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/model/evidence/reads.rs:335:1 [INFO] [stdout] | [INFO] [stdout] 335 | / lazy_static! { [INFO] [stdout] 336 | | static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333)); [INFO] [stdout] 337 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/model/priors/single_cell_bulk.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / cached! { [INFO] [stdout] 27 | | AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new(); [INFO] [stdout] 28 | | // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E) [INFO] [stdout] 29 | | // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand [INFO] [stdout] ... | [INFO] [stdout] 96 | | } [INFO] [stdout] 97 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 33 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling aho-corasick v0.5.3 [INFO] [stderr] Compiling kernel32-sys v0.2.2 [INFO] [stderr] Compiling unicase v1.4.2 [INFO] [stderr] Compiling thread-id v2.0.0 [INFO] [stderr] Compiling thread_local v0.2.7 [INFO] [stderr] Compiling hyper v0.10.16 [INFO] [stderr] Compiling flate2 v0.2.20 [INFO] [stderr] Compiling regex v0.1.80 [INFO] [stderr] Compiling env_logger v0.3.5 [INFO] [stderr] Compiling libprosic v0.7.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/call/pairwise.rs:62:20 [INFO] [stdout] | [INFO] [stdout] 62 | let variants = try!(utils::collect_variants( [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/call/pairwise.rs:70:21 [INFO] [stdout] | [INFO] [stdout] 70 | let chrom_seq = try!(reference_buffer.seq(&chrom)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/call/pairwise.rs:75:18 [INFO] [stdout] | [INFO] [stdout] 75 | Some(try!(joint_model.pileup( [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/call/pairwise.rs:159:26 [INFO] [stdout] | [INFO] [stdout] 159 | let mut writer = try!(csv::WriterBuilder::new() [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'try': use the `?` operator instead [INFO] [stdout] --> src/model/sample.rs:76:17 [INFO] [stdout] | [INFO] [stdout] 76 | try!(self.reader.fetch(tid, window_start, end)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/call/pairwise.rs:55:62 [INFO] [stdout] | [INFO] [stdout] 55 | ) -> Result>>, Box> [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/call/pairwise.rs:116:21 [INFO] [stdout] | [INFO] [stdout] 116 | ) -> Result<(), Box> [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/estimation/alignment_properties.rs:40:68 [INFO] [stdout] | [INFO] [stdout] 40 | pub fn estimate(bam: &mut R) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/estimation/alignment_properties.rs:142:33 [INFO] [stdout] | [INFO] [stdout] 142 | ) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/estimation/fdr/ev.rs:35:21 [INFO] [stdout] | [INFO] [stdout] 35 | ) -> Result<(), Box> [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/fragments.rs:52:89 [INFO] [stdout] | [INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/fragments.rs:56:68 [INFO] [stdout] | [INFO] [stdout] 56 | let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/fragments.rs:120:41 [INFO] [stdout] | [INFO] [stdout] 120 | ) -> Result<(LogProb, LogProb), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/reads.rs:30:49 [INFO] [stdout] | [INFO] [stdout] 30 | ) -> Result, Box>; [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/reads.rs:56:49 [INFO] [stdout] | [INFO] [stdout] 56 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/reads.rs:101:49 [INFO] [stdout] | [INFO] [stdout] 101 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/evidence/reads.rs:169:49 [INFO] [stdout] | [INFO] [stdout] 169 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:68:82 [INFO] [stdout] | [INFO] [stdout] 68 | pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:220:39 [INFO] [stdout] | [INFO] [stdout] 220 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:362:42 [INFO] [stdout] | [INFO] [stdout] 362 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:363:34 [INFO] [stdout] | [INFO] [stdout] 363 | let mut evidence: RefMut = match variant { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:409:42 [INFO] [stdout] | [INFO] [stdout] 409 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/sample.rs:412:44 [INFO] [stdout] | [INFO] [stdout] 412 | -> Result<(LogProb, LogProb), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/mod.rs:275:41 [INFO] [stdout] | [INFO] [stdout] 275 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/model/mod.rs:416:42 [INFO] [stdout] | [INFO] [stdout] 416 | ) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:27:46 [INFO] [stdout] | [INFO] [stdout] 27 | ) -> Result>, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:204:62 [INFO] [stdout] | [INFO] [stdout] 204 | pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:232:39 [INFO] [stdout] | [INFO] [stdout] 232 | ) -> Result>, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:276:35 [INFO] [stdout] | [INFO] [stdout] 276 | ) -> Result>, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:317:21 [INFO] [stdout] | [INFO] [stdout] 317 | ) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:367:30 [INFO] [stdout] | [INFO] [stdout] 367 | ) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/model/evidence/reads.rs:335:1 [INFO] [stdout] | [INFO] [stdout] 335 | / lazy_static! { [INFO] [stdout] 336 | | static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333)); [INFO] [stdout] 337 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::sync::ONCE_INIT': the `new` function is now preferred [INFO] [stdout] --> src/model/priors/single_cell_bulk.rs:26:1 [INFO] [stdout] | [INFO] [stdout] 26 | / cached! { [INFO] [stdout] 27 | | AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new(); [INFO] [stdout] 28 | | // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E) [INFO] [stdout] 29 | | // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand [INFO] [stdout] ... | [INFO] [stdout] 96 | | } [INFO] [stdout] 97 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this method call currently resolves to `<&[T; N] as IntoIterator>::into_iter` (due to autoref coercions), but that might change in the future when `IntoIterator` impls for arrays are added. [INFO] [stdout] --> src/model/sample.rs:612:79 [INFO] [stdout] | [INFO] [stdout] 612 | for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.into_iter()) { [INFO] [stdout] | ^^^^^^^^^ help: use `.iter()` instead of `.into_iter()` to avoid ambiguity: `iter` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(array_into_iter)]` on by default [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #66145 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: linking with `cc` failed: exit code: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-Wl,--eh-frame-hdr" "-L" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.0.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.1.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.10.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.11.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.12.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.13.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.14.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.15.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.2.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.3.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.4.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.5.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.6.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.7.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.8.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.libprosic.6vzf2m3v-cgu.9.rcgu.o" "-o" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233" "/opt/rustwide/target/debug/deps/libprosic-4052170102a33233.339tb0qxazmhq62o.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/target/debug/build/miniz-sys-6c2244a9e1d9a92b/out" "-L" "/opt/rustwide/target/debug/build/rust-htslib-9ea9b168396157af/out" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e47fad83bb1d9835/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/libtest-6805c615af620a51.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/libterm-975e251edec7895a.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgetopts-fa89c22811cbba70.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunicode_width-8e79a065fef863f3.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_std-a68d66da01a6ed2b.rlib" "/opt/rustwide/target/debug/deps/libenv_logger-7c1c70a978ec9093.rlib" "/opt/rustwide/target/debug/deps/libregex-a0916f3d21a5349e.rlib" "/opt/rustwide/target/debug/deps/libutf8_ranges-f3b1a88dafe69a35.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-0f30367a12de9575.rlib" "/opt/rustwide/target/debug/deps/libthread_local-d6d91e0669eea50e.rlib" "/opt/rustwide/target/debug/deps/libthread_id-15010dcee6634784.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-882b42a3fcefc7d5.rlib" "/opt/rustwide/target/debug/deps/libmemchr-3bbb5d3037984882.rlib" "/opt/rustwide/target/debug/deps/libcached-4f3e0efe43ae73d3.rlib" "/opt/rustwide/target/debug/deps/libregex-4e2e5ec02724012a.rlib" "/opt/rustwide/target/debug/deps/libutf8_ranges-249fc7ed27b8f63d.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-10a23ee17ebd16e6.rlib" "/opt/rustwide/target/debug/deps/libucd_util-683ba97c97b91bd2.rlib" "/opt/rustwide/target/debug/deps/libthread_local-ab0e02efafb11915.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-8663b6f8a51e1569.rlib" "/opt/rustwide/target/debug/deps/librusty_machine-eab16a2947d0ad77.rlib" "/opt/rustwide/target/debug/deps/librulinalg-12738f07ca3d2e8a.rlib" "/opt/rustwide/target/debug/deps/libnum-0e0aaaabc1938126.rlib" "/opt/rustwide/target/debug/deps/libnum_iter-6cc2bae55fe479a2.rlib" "/opt/rustwide/target/debug/deps/libndarray-62e6195902139b63.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-cc2450c0ae571855.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-cab655305954ee4c.rlib" "/opt/rustwide/target/debug/deps/libitertools-9eeeb9faff229c13.rlib" "/opt/rustwide/target/debug/deps/libapprox-bec25f09c42b804a.rlib" "/opt/rustwide/target/debug/deps/librgsl-107e961bbe95e797.rlib" "/opt/rustwide/target/debug/deps/libc_vec-c1a3dd2128644df0.rlib" "/opt/rustwide/target/debug/deps/liblog-bb9f71d1569cdaf1.rlib" "/opt/rustwide/target/debug/deps/liblog-93951ff8e53c2b76.rlib" "/opt/rustwide/target/debug/deps/libcfg_if-b00c34326580381c.rlib" "/opt/rustwide/target/debug/deps/librust_htslib-a41f5293effe09b3.rlib" "/opt/rustwide/target/debug/deps/liblzma_sys-001898ee511bb29e.rlib" "/opt/rustwide/target/debug/deps/libbzip2_sys-f256b1bc195cfa06.rlib" "/opt/rustwide/target/debug/deps/liblibz_sys-87a9cdf1686d40db.rlib" "/opt/rustwide/target/debug/deps/liblinear_map-e0069537d4429c5b.rlib" "/opt/rustwide/target/debug/deps/liburl-3465c0a6ad65d1a6.rlib" "/opt/rustwide/target/debug/deps/libpercent_encoding-7d671435c22c2140.rlib" "/opt/rustwide/target/debug/deps/libidna-77592b4e8a5f09b8.rlib" "/opt/rustwide/target/debug/deps/libunicode_normalization-793e6d5456c18338.rlib" "/opt/rustwide/target/debug/deps/libtinyvec-91560eb940a2b5d1.rlib" "/opt/rustwide/target/debug/deps/libunicode_bidi-81f7bca86d771a09.rlib" "/opt/rustwide/target/debug/deps/libmatches-84413336e46be589.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-65d9f7d0b961f44d.rlib" "/opt/rustwide/target/debug/deps/libitertools-560d73767dd9fc27.rlib" "/opt/rustwide/target/debug/deps/libieee754-546bd3f961c62d7c.rlib" "/opt/rustwide/target/debug/deps/libbitflags-b58201556325004c.rlib" "/opt/rustwide/target/debug/deps/libbio-844ba8b5cfdea7b9.rlib" "/opt/rustwide/target/debug/deps/libfxhash-572335cff6d39cdb.rlib" "/opt/rustwide/target/debug/deps/libvec_map-7a6c6aa0f057787c.rlib" "/opt/rustwide/target/debug/deps/libstatrs-9eb9692f5ac0afb3.rlib" "/opt/rustwide/target/debug/deps/librand-e58c0108df8305f4.rlib" "/opt/rustwide/target/debug/deps/librand-af775cf33be10e20.rlib" "/opt/rustwide/target/debug/deps/liblibc-335c720e6547c055.rlib" "/opt/rustwide/target/debug/deps/libfnv-4e1f361c8239009e.rlib" "/opt/rustwide/target/debug/deps/libbv-163b36cfd26e6b04.rlib" "/opt/rustwide/target/debug/deps/libordered_float-85bbede33271acfa.rlib" "/opt/rustwide/target/debug/deps/libnum_integer-c0aa1ac2f0769395.rlib" "/opt/rustwide/target/debug/deps/libnewtype_derive-8ade95f05bc6d2d2.rlib" "/opt/rustwide/target/debug/deps/libndarray-30f9a0b3afc767b3.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-a66465cbebc5d854.rlib" "/opt/rustwide/target/debug/deps/libmatrixmultiply-ac4badf22f65b649.rlib" "/opt/rustwide/target/debug/deps/librawpointer-7afdcc898c14c855.rlib" "/opt/rustwide/target/debug/deps/libmultimap-74e6514c26f93df6.rlib" "/opt/rustwide/target/debug/deps/libitertools_num-a4d39f44189b7c5c.rlib" "/opt/rustwide/target/debug/deps/libitertools-48c55f61becf1091.rlib" "/opt/rustwide/target/debug/deps/libeither-d16fe89f95ef3ba1.rlib" "/opt/rustwide/target/debug/deps/libcustom_derive-fddca1e9550cc2e2.rlib" "/opt/rustwide/target/debug/deps/libcsv-3de023ba5f515adf.rlib" "/opt/rustwide/target/debug/deps/libryu-49c6c0501005e538.rlib" "/opt/rustwide/target/debug/deps/libitoa-249c7ebdf9af9cde.rlib" "/opt/rustwide/target/debug/deps/libcsv_core-ca65757a6e0cd8e3.rlib" "/opt/rustwide/target/debug/deps/libbstr-05f2290ce5b373b1.rlib" "/opt/rustwide/target/debug/deps/libregex_automata-74bec1f2602bedf5.rlib" "/opt/rustwide/target/debug/deps/libbyteorder-8e7ddb72171cc91f.rlib" "/opt/rustwide/target/debug/deps/libbytecount-c740a2dd20123bb6.rlib" "/opt/rustwide/target/debug/deps/libbit_set-d901314cb4415997.rlib" "/opt/rustwide/target/debug/deps/libbit_vec-05ed3ea717f06ed4.rlib" "/opt/rustwide/target/debug/deps/libapprox-027ca86a665ed95c.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-2de2b3e19ad17644.rlib" "/opt/rustwide/target/debug/deps/libbio_types-e2f29b3606cd6f3d.rlib" "/opt/rustwide/target/debug/deps/libserde-e2c16c8dbacdb4c4.rlib" "/opt/rustwide/target/debug/deps/libregex-cdf5ba7f1abc44f9.rlib" "/opt/rustwide/target/debug/deps/libthread_local-c3b7931041689864.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-e84a84df48f8cb81.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-34848da6eff62490.rlib" "/opt/rustwide/target/debug/deps/libmemchr-1e6b68a09fbeab95.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-7c0477ae3415ac1f.rlib" "/opt/rustwide/target/debug/deps/libquick_error-04f7773cc8ada14a.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-5989bcf78182f65e.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-4d6da34bc177af8d.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-10e0d6c948699482.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-c2318e2415657781.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace-3815b93ed84badbb.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace_sys-d7999143d95238cb.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-c58298a0d40df8b8.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-b7de97e2ba6fb4e2.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-6f71c9f654d72cce.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-95ea48ddc44a311b.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-7402cd4761aebc14.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-68f423c59dc48a40.rlib" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-54580c7798bf2225.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-95a4d456339b7385.rlib" "-Wl,-Bdynamic" "-llzma" "-lz" "-lutil" "-ldl" "-lutil" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-ldl" "-lutil" [INFO] [stdout] = note: /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-107e961bbe95e797.rlib(rgsl-107e961bbe95e797.rgsl.8jyskspq-cgu.11.rcgu.o): in function `rgsl::randist::gaussian::gaussian_pdf': [INFO] [stdout] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/randist/gaussian.rs:20: undefined reference to `gsl_ran_gaussian_pdf' [INFO] [stdout] /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-107e961bbe95e797.rlib(rgsl-107e961bbe95e797.rgsl.8jyskspq-cgu.11.rcgu.o): in function `rgsl::randist::gaussian::ugaussian_P': [INFO] [stdout] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/randist/gaussian.rs:73: undefined reference to `gsl_cdf_ugaussian_P' [INFO] [stdout] /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-107e961bbe95e797.rlib(rgsl-107e961bbe95e797.rgsl.8jyskspq-cgu.9.rcgu.o): in function `rgsl::error::erfc': [INFO] [stdout] /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/error.rs:28: undefined reference to `gsl_sf_erfc' [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error; 34 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `libprosic`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] running `Command { std: "docker" "inspect" "de67c623ef4e7ea3012b92adb5831c481b0213bf554009252937c0b52d3a46ca", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "de67c623ef4e7ea3012b92adb5831c481b0213bf554009252937c0b52d3a46ca", kill_on_drop: false }` [INFO] [stdout] de67c623ef4e7ea3012b92adb5831c481b0213bf554009252937c0b52d3a46ca