[INFO] updating cached repository https://github.com/guertinlab/seqOutBias [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 4b0d004cf7be18e35718dc2864341316fd78077c [INFO] testing guertinlab/seqOutBias against try#03a1ea71b075ab964b5278bc6e74cd6c52c36ee0 for pr-74409 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2FseqOutBias" "/workspace/builds/worker-5/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/guertinlab/seqOutBias on toolchain 03a1ea71b075ab964b5278bc6e74cd6c52c36ee0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/guertinlab/seqOutBias [INFO] finished tweaking git repo https://github.com/guertinlab/seqOutBias [INFO] tweaked toml for git repo https://github.com/guertinlab/seqOutBias written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate git repo https://github.com/guertinlab/seqOutBias already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4e30c2389a0046cc8c531fe81ab668b6b096ae3a33d625759dfe2ab9b971c02e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "4e30c2389a0046cc8c531fe81ab668b6b096ae3a33d625759dfe2ab9b971c02e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4e30c2389a0046cc8c531fe81ab668b6b096ae3a33d625759dfe2ab9b971c02e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4e30c2389a0046cc8c531fe81ab668b6b096ae3a33d625759dfe2ab9b971c02e", kill_on_drop: false }` [INFO] [stdout] 4e30c2389a0046cc8c531fe81ab668b6b096ae3a33d625759dfe2ab9b971c02e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a26bcdf90d2a252f201aee2b0f23d99a6814a4e215e1a416369c2765a702b704 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a26bcdf90d2a252f201aee2b0f23d99a6814a4e215e1a416369c2765a702b704", kill_on_drop: false }` [INFO] [stderr] Compiling matches v0.1.6 [INFO] [stderr] Compiling gcc v0.3.45 [INFO] [stderr] Compiling unicode-normalization v0.1.5 [INFO] [stderr] Compiling regex-syntax v0.3.9 [INFO] [stderr] Compiling rustc-serialize v0.3.23 [INFO] [stderr] Compiling utf8-ranges v0.1.3 [INFO] [stderr] Compiling percent-encoding v1.0.0 [INFO] [stderr] Compiling rust-htslib v0.12.1 [INFO] [stderr] Compiling lazy_static v0.2.6 [INFO] [stderr] Compiling quick-error v1.2.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling ieee754 v0.2.2 [INFO] [stderr] Compiling memchr v0.1.11 [INFO] [stderr] Compiling rand v0.4.3 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling seqOutBias v1.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling thread-id v2.0.0 [INFO] [stderr] Compiling thread_local v0.2.7 [INFO] [stderr] Compiling aho-corasick v0.5.3 [INFO] [stderr] Compiling miniz-sys v0.1.9 [INFO] [stderr] Compiling idna v0.1.2 [INFO] [stderr] Compiling rand v0.3.22 [INFO] [stderr] Compiling tempfile v2.2.0 [INFO] [stderr] Compiling flate2 v0.2.18 [INFO] [stderr] Compiling regex v0.1.80 [INFO] [stderr] Compiling url v1.7.2 [INFO] [stderr] Compiling bincode v0.5.9 [INFO] [stderr] Compiling docopt v0.6.86 [INFO] [stdout] error: could not find native static library `hts`, perhaps an -L flag is missing? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `rust-htslib`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "a26bcdf90d2a252f201aee2b0f23d99a6814a4e215e1a416369c2765a702b704", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a26bcdf90d2a252f201aee2b0f23d99a6814a4e215e1a416369c2765a702b704", kill_on_drop: false }` [INFO] [stdout] a26bcdf90d2a252f201aee2b0f23d99a6814a4e215e1a416369c2765a702b704