[INFO] updating cached repository https://github.com/chfi/rust-qtlreaper [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8d650921ec4aec63c42068de58b91579228f57b1 [INFO] testing chfi/rust-qtlreaper against try#03a1ea71b075ab964b5278bc6e74cd6c52c36ee0 for pr-74409 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frust-qtlreaper" "/workspace/builds/worker-4/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/chfi/rust-qtlreaper on toolchain 03a1ea71b075ab964b5278bc6e74cd6c52c36ee0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/chfi/rust-qtlreaper [INFO] finished tweaking git repo https://github.com/chfi/rust-qtlreaper [INFO] tweaked toml for git repo https://github.com/chfi/rust-qtlreaper written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate git repo https://github.com/chfi/rust-qtlreaper already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] error: the lock file /workspace/builds/worker-4/source/Cargo.lock needs to be updated but --locked was passed to prevent this [INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag. [INFO] the lockfile is outdated, regenerating it [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 101ecbf67f484bd49a2b4aba6aa9d4ad627dae3cb1e30e6c1b174b91f527f69c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "101ecbf67f484bd49a2b4aba6aa9d4ad627dae3cb1e30e6c1b174b91f527f69c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "101ecbf67f484bd49a2b4aba6aa9d4ad627dae3cb1e30e6c1b174b91f527f69c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "101ecbf67f484bd49a2b4aba6aa9d4ad627dae3cb1e30e6c1b174b91f527f69c", kill_on_drop: false }` [INFO] [stdout] 101ecbf67f484bd49a2b4aba6aa9d4ad627dae3cb1e30e6c1b174b91f527f69c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5180b7cdc991a76ef6604f3fbd4e9c1a879a1d31941bbfa73299968203407af1 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5180b7cdc991a76ef6604f3fbd4e9c1a879a1d31941bbfa73299968203407af1", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling libc v0.2.73 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling rayon-core v1.7.1 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling unicode-segmentation v1.6.0 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling serde_derive v1.0.114 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.5 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling rayon v1.3.1 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling crossbeam-queue v0.2.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling crossbeam-deque v0.7.3 [INFO] [stderr] Compiling structopt-derive v0.2.18 [INFO] [stderr] Compiling structopt v0.2.18 [INFO] [stderr] Compiling serde v1.0.114 [INFO] [stderr] Compiling serde_json v1.0.56 [INFO] [stderr] Compiling qtlreaper v0.1.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/lib.rs:5:22 [INFO] [stdout] | [INFO] [stdout] 5 | #[macro_use(s, azip, array)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stdout] --> src/regression.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `regression_2n_variance` [INFO] [stdout] --> src/regression.rs:250:4 [INFO] [stdout] | [INFO] [stdout] 250 | fn regression_2n_variance( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 10s [INFO] running `Command { std: "docker" "inspect" "5180b7cdc991a76ef6604f3fbd4e9c1a879a1d31941bbfa73299968203407af1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5180b7cdc991a76ef6604f3fbd4e9c1a879a1d31941bbfa73299968203407af1", kill_on_drop: false }` [INFO] [stdout] 5180b7cdc991a76ef6604f3fbd4e9c1a879a1d31941bbfa73299968203407af1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 24b019747bcb83e5d577d84ed34d6bfee342a8096860bd0e97bd8905bf51cc85 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "24b019747bcb83e5d577d84ed34d6bfee342a8096860bd0e97bd8905bf51cc85", kill_on_drop: false }` [INFO] [stderr] Compiling qtlreaper v0.1.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/lib.rs:5:22 [INFO] [stdout] | [INFO] [stdout] 5 | #[macro_use(s, azip, array)] [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stdout] --> src/regression.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `regression_2n_variance` [INFO] [stdout] --> src/regression.rs:250:4 [INFO] [stdout] | [INFO] [stdout] 250 | fn regression_2n_variance( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stdout] --> src/regression.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `regression_2n_variance` [INFO] [stdout] --> src/regression.rs:250:4 [INFO] [stdout] | [INFO] [stdout] 250 | fn regression_2n_variance( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 4.13s [INFO] running `Command { std: "docker" "inspect" "24b019747bcb83e5d577d84ed34d6bfee342a8096860bd0e97bd8905bf51cc85", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "24b019747bcb83e5d577d84ed34d6bfee342a8096860bd0e97bd8905bf51cc85", kill_on_drop: false }` [INFO] [stdout] 24b019747bcb83e5d577d84ed34d6bfee342a8096860bd0e97bd8905bf51cc85 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 24f588b106e1a8e5298a45e4d6b4a12869b32cd086b16778f293dbfe4fcfa696 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "24f588b106e1a8e5298a45e4d6b4a12869b32cd086b16778f293dbfe4fcfa696", kill_on_drop: false }` [INFO] [stderr] warning: unused `#[macro_use]` import [INFO] [stderr] --> src/lib.rs:5:22 [INFO] [stderr] | [INFO] [stderr] 5 | #[macro_use(s, azip, array)] [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stderr] --> src/regression.rs:5:1 [INFO] [stderr] | [INFO] [stderr] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `regression_2n_variance` [INFO] [stderr] --> src/regression.rs:250:4 [INFO] [stderr] | [INFO] [stderr] 250 | fn regression_2n_variance( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: 3 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: constant is never used: `PERMUTATION_TESTSIZE` [INFO] [stderr] --> src/regression.rs:5:1 [INFO] [stderr] | [INFO] [stderr] 5 | const PERMUTATION_TESTSIZE: usize = 1000; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `regression_2n_variance` [INFO] [stderr] --> src/regression.rs:250:4 [INFO] [stderr] | [INFO] [stderr] 250 | fn regression_2n_variance( [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.28s [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/qtlreaper-fbf9e23c9dccffe9 [INFO] [stdout] running 3 tests [INFO] [stdout] test geneobject::tests::it_can_parse_metadata ... ok [INFO] [stdout] test geneobject::tests::it_can_parse_header ... ok [INFO] [stdout] test geneobject::tests::it_can_estimate_unknown_genotypes ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- geneobject::tests::it_can_estimate_unknown_genotypes stdout ---- [INFO] [stdout] thread 'geneobject::tests::it_can_estimate_unknown_genotypes' panicked at 'assertion failed: `(left == right)` [INFO] [stdout] left: `[Locus { dominance: None, genotype: [Mat, Mat, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-1.0, -1.0, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Pat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-0.18523506128077272, 1.0, 0.9616255554798838] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.18906668494617707, 0.3421367343627406, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.5826065314914579, -0.32233300305265566, 0.3223330030526552] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -0.34213673436274084] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Mat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]`, [INFO] [stdout] right: `[Locus { dominance: None, genotype: [Mat, Mat, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-1.0, -1.0, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Pat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-0.18523506128077272, 1.0, 0.9616255554798838] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.18906668494617707, 0.3421367343627405, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.5826065314914579, -0.3223330030526561, 0.3223330030526552] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -0.34213673436274084] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Mat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]`', src/geneobject.rs:895:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55e2e8a99ca5 - backtrace::backtrace::libunwind::trace::hea89dfbbfe67f40d [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x55e2e8a99ca5 - backtrace::backtrace::trace_unsynchronized::h0513dd713d7644d4 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x55e2e8a99ca5 - std::sys_common::backtrace::_print_fmt::h040abae64e4a24a9 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x55e2e8a99ca5 - ::fmt::hb4bdb37c3c335733 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x55e2e8ac191c - core::fmt::write::h540ac4a6a1232abc [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x55e2e8a3c625 - std::io::Write::write_fmt::h4be0daababb55bba [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libstd/io/mod.rs:1539 [INFO] [stdout] 6: 0x55e2e8a94371 - std::io::impls::>::write_fmt::h83c1e1aa73f374f5 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x55e2e8a9c400 - std::sys_common::backtrace::_print::hb55cc635eaf1882e [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x55e2e8a9c400 - std::sys_common::backtrace::print::h2b2218fa55714084 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x55e2e8a9c400 - std::panicking::default_hook::{{closure}}::h578517c025765cf3 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x55e2e8a9c0fa - std::panicking::default_hook::h4cafc94c2fc640fb [INFO] [stdout] at src/libstd/panicking.rs:214 [INFO] [stdout] 11: 0x55e2e8a9ca43 - std::panicking::rust_panic_with_hook::h3eeb5001beeca5c3 [INFO] [stdout] at src/libstd/panicking.rs:526 [INFO] [stdout] 12: 0x55e2e8a9c63b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:437 [INFO] [stdout] 13: 0x55e2e8a9c5ab - std::panicking::begin_panic_fmt::hbb5e59697acc78ba [INFO] [stdout] at src/libstd/panicking.rs:391 [INFO] [stdout] 14: 0x55e2e8a33342 - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::h066ea1156d94ba35 [INFO] [stdout] at src/geneobject.rs:895 [INFO] [stdout] 15: 0x55e2e8a312ca - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::{{closure}}::he7308ecdf573dc06 [INFO] [stdout] at src/geneobject.rs:808 [INFO] [stdout] 16: 0x55e2e8a1bfbe - core::ops::function::FnOnce::call_once::h9ed0f1cd5dfb041f [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libcore/ops/function.rs:233 [INFO] [stdout] 17: 0x55e2e8a63b9c - as core::ops::function::FnOnce>::call_once::h8340ba6798e0c4ff [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/liballoc/boxed.rs:1081 [INFO] [stdout] 18: 0x55e2e8a63b9c - as core::ops::function::FnOnce<()>>::call_once::h5590e98676605094 [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libstd/panic.rs:318 [INFO] [stdout] 19: 0x55e2e8a63b9c - std::panicking::try::do_call::hd8680a2dbb0ed3c4 [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libstd/panicking.rs:348 [INFO] [stdout] 20: 0x55e2e8a63b9c - std::panicking::try::h46b4de2d705e7a8d [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libstd/panicking.rs:325 [INFO] [stdout] 21: 0x55e2e8a63b9c - std::panic::catch_unwind::h059b3f06991e0a9c [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libstd/panic.rs:394 [INFO] [stdout] 22: 0x55e2e8a63b9c - test::run_test_in_process::h5ae08a65430494a4 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 23: 0x55e2e8a63b9c - test::run_test::run_test_inner::{{closure}}::h4b36073838376ae8 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 24: 0x55e2e8a3bb16 - std::sys_common::backtrace::__rust_begin_short_backtrace::h0169d0be588b8bf0 [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 25: 0x55e2e8a40b05 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h71bfc37e887d3973 [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libstd/thread/mod.rs:475 [INFO] [stdout] 26: 0x55e2e8a40b05 - as core::ops::function::FnOnce<()>>::call_once::h36c65072907dc180 [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libstd/panic.rs:318 [INFO] [stdout] 27: 0x55e2e8a40b05 - std::panicking::try::do_call::h4e0f426e17cd216c [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libstd/panicking.rs:348 [INFO] [stdout] 28: 0x55e2e8a40b05 - std::panicking::try::hd05e4ef6b4303d29 [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libstd/panicking.rs:325 [INFO] [stdout] 29: 0x55e2e8a40b05 - std::panic::catch_unwind::h19a1127ec729c5dd [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libstd/panic.rs:394 [INFO] [stdout] 30: 0x55e2e8a40b05 - std::thread::Builder::spawn_unchecked::{{closure}}::h011300735f06b1e2 [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libstd/thread/mod.rs:474 [INFO] [stdout] 31: 0x55e2e8a40b05 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h1e3c55f31f1d122e [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/libcore/ops/function.rs:233 [INFO] [stdout] 32: 0x55e2e8aa2c1a - as core::ops::function::FnOnce>::call_once::hc0e15d78a519721e [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/liballoc/boxed.rs:1081 [INFO] [stdout] 33: 0x55e2e8aa2c1a - as core::ops::function::FnOnce>::call_once::h211da8fffb09f192 [INFO] [stdout] at /rustc/03a1ea71b075ab964b5278bc6e74cd6c52c36ee0/src/liballoc/boxed.rs:1081 [INFO] [stdout] 34: 0x55e2e8aa2c1a - std::sys::unix::thread::Thread::new::thread_start::h29594ddebf23e421 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 35: 0x7fcaeef47609 - start_thread [INFO] [stdout] 36: 0x7fcaeee53103 - __clone [INFO] [stdout] 37: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] geneobject::tests::it_can_estimate_unknown_genotypes [INFO] [stdout] [INFO] [stdout] test result: FAILED. 2 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `Command { std: "docker" "inspect" "24f588b106e1a8e5298a45e4d6b4a12869b32cd086b16778f293dbfe4fcfa696", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "24f588b106e1a8e5298a45e4d6b4a12869b32cd086b16778f293dbfe4fcfa696", kill_on_drop: false }` [INFO] [stdout] 24f588b106e1a8e5298a45e4d6b4a12869b32cd086b16778f293dbfe4fcfa696