[INFO] updating cached repository https://github.com/10XGenomics/vartrix
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }`
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ee58dab610c5be5e8605aa913610eb510f49f1b6
[INFO] testing 10XGenomics/vartrix against try#03a1ea71b075ab964b5278bc6e74cd6c52c36ee0 for pr-74409
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix" "/workspace/builds/worker-7/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/10XGenomics/vartrix on toolchain 03a1ea71b075ab964b5278bc6e74cd6c52c36ee0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/10XGenomics/vartrix
[INFO] finished tweaking git repo https://github.com/10XGenomics/vartrix
[INFO] tweaked toml for git repo https://github.com/10XGenomics/vartrix written to /workspace/builds/worker-7/source/Cargo.toml
[INFO] crate git repo https://github.com/10XGenomics/vartrix already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] dcdb2f06a0e49f60276d77516153e9d818a7e60817a4771c036d64cbb165a8ae
[INFO] running `Command { std: "docker" "start" "-a" "dcdb2f06a0e49f60276d77516153e9d818a7e60817a4771c036d64cbb165a8ae", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "dcdb2f06a0e49f60276d77516153e9d818a7e60817a4771c036d64cbb165a8ae", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dcdb2f06a0e49f60276d77516153e9d818a7e60817a4771c036d64cbb165a8ae", kill_on_drop: false }`
[INFO] [stdout] dcdb2f06a0e49f60276d77516153e9d818a7e60817a4771c036d64cbb165a8ae
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3587a40843ad0fdfa079092b9ec097afac32e08670e5d10fe138b2af48b25476
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "3587a40843ad0fdfa079092b9ec097afac32e08670e5d10fe138b2af48b25476", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.62
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[INFO] [stderr]    Compiling unicode-xid v0.1.0
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[INFO] [stderr]    Compiling c2-chacha v0.2.2
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[INFO] [stderr]    Compiling crossbeam-deque v0.7.1
[INFO] [stderr]    Compiling chrono v0.4.9
[INFO] [stderr]    Compiling cexpr v0.3.6
[INFO] [stderr]    Compiling regex v1.3.1
[INFO] [stderr]    Compiling statrs v0.11.0
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[INFO] [stderr]    Compiling tempfile v3.1.0
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[INFO] [stderr]    Compiling os_type v2.2.0
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[INFO] [stderr]    Compiling serde_derive v1.0.101
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[INFO] [stderr]    Compiling strum_macros v0.16.0
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[INFO] [stderr]    Compiling failure_derive v0.1.5
[INFO] [stderr]    Compiling failure v0.1.5
[INFO] [stderr]    Compiling hts-sys v1.9.0 (https://github.com/rust-bio/rust-htslib.git?rev=37533bded4692a78cfe080378a09209b95dc3cca#37533bde)
[INFO] [stderr]    Compiling snafu v0.6.0
[INFO] [stderr]    Compiling snafu v0.5.0
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bstr v0.2.8
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling toml v0.4.10
[INFO] [stderr]    Compiling sprs v0.6.5
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling csv v1.1.1
[INFO] [stderr]    Compiling human-panic v1.0.1
[INFO] [stderr]    Compiling rust-htslib v0.26.1 (https://github.com/rust-bio/rust-htslib.git?rev=37533bded4692a78cfe080378a09209b95dc3cca#37533bde)
[INFO] [stderr]    Compiling vartrix v1.1.14 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 4m 24s
[INFO] running `Command { std: "docker" "inspect" "3587a40843ad0fdfa079092b9ec097afac32e08670e5d10fe138b2af48b25476", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3587a40843ad0fdfa079092b9ec097afac32e08670e5d10fe138b2af48b25476", kill_on_drop: false }`
[INFO] [stdout] 3587a40843ad0fdfa079092b9ec097afac32e08670e5d10fe138b2af48b25476
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ae9f07e90302116cbd74b31f747d0910e4d651a1c53edfde3cf8e03926ecf6ed
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "ae9f07e90302116cbd74b31f747d0910e4d651a1c53edfde3cf8e03926ecf6ed", kill_on_drop: false }`
[INFO] [stderr]    Compiling vartrix v1.1.14 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 9.07s
[INFO] running `Command { std: "docker" "inspect" "ae9f07e90302116cbd74b31f747d0910e4d651a1c53edfde3cf8e03926ecf6ed", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ae9f07e90302116cbd74b31f747d0910e4d651a1c53edfde3cf8e03926ecf6ed", kill_on_drop: false }`
[INFO] [stdout] ae9f07e90302116cbd74b31f747d0910e4d651a1c53edfde3cf8e03926ecf6ed
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+03a1ea71b075ab964b5278bc6e74cd6c52c36ee0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 115cbe8be2835128e429377e20a250103c4b0fa9329751606cc3f9066274d40c
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "115cbe8be2835128e429377e20a250103c4b0fa9329751606cc3f9066274d40c", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.35s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/vartrix-7172646b388ee6af
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test tests::test_coverage_matrices_umi_gzipped_bcs ... ok
[INFO] [stdout] test tests::test_consensus_matrix ... ok
[INFO] [stdout] test tests::test_coverage_matrices ... ok
[INFO] [stdout] test tests::test_frac_matrix ... ok
[INFO] [stdout] test tests::test_coverage_matrices_umi ... ok
[INFO] [stderr] 15:07:47 [ERROR] The resulting matrix has a sum of 0. Did you use the --umi flag on data without UMIs?
[INFO] [stdout] test tests::test_coverage_matrices_umi_dna ... ok
[INFO] [stdout] test tests::test_coverage_matrices_dna ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "115cbe8be2835128e429377e20a250103c4b0fa9329751606cc3f9066274d40c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "115cbe8be2835128e429377e20a250103c4b0fa9329751606cc3f9066274d40c", kill_on_drop: false }`
[INFO] [stdout] 115cbe8be2835128e429377e20a250103c4b0fa9329751606cc3f9066274d40c