[INFO] crate yacrd 0.6.1 is already in cache [INFO] testing yacrd-0.6.1 against master#8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e for pr-74409 [INFO] extracting crate yacrd 0.6.1 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate yacrd 0.6.1 on toolchain 8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate yacrd 0.6.1 [INFO] finished tweaking crates.io crate yacrd 0.6.1 [INFO] tweaked toml for crates.io crate yacrd 0.6.1 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate crates.io crate yacrd 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e46cf9d07dc0b91105a1b55093a3fd0551cdf48b1ce66f41794092e6c35542ea [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e46cf9d07dc0b91105a1b55093a3fd0551cdf48b1ce66f41794092e6c35542ea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e46cf9d07dc0b91105a1b55093a3fd0551cdf48b1ce66f41794092e6c35542ea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e46cf9d07dc0b91105a1b55093a3fd0551cdf48b1ce66f41794092e6c35542ea", kill_on_drop: false }` [INFO] [stdout] e46cf9d07dc0b91105a1b55093a3fd0551cdf48b1ce66f41794092e6c35542ea [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 21e787e0f2fb7f8a02eec44b5fb50b9404ccd13a1f2f1f3b87d36187955d5164 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "21e787e0f2fb7f8a02eec44b5fb50b9404ccd13a1f2f1f3b87d36187955d5164", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.17 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.25 [INFO] [stderr] Compiling libc v0.2.70 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling serde v1.0.110 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling cc v1.0.54 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling unicode-segmentation v1.6.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.8 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling ryu v1.0.4 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling log v0.4.8 [INFO] [stderr] Compiling adler32 v1.0.4 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling unicode-width v0.1.7 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling anyhow v1.0.31 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling bio v0.30.1 [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling strum v0.18.0 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling bytecount v0.6.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling matrixmultiply v0.2.3 [INFO] [stderr] Compiling miniz_oxide v0.3.6 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.2 [INFO] [stderr] Compiling proc-macro-error v1.0.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling quote v1.0.6 [INFO] [stderr] Compiling bzip2-sys v0.1.8+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.0.14 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling regex v1.3.7 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling enum_primitive v0.1.1 [INFO] [stderr] Compiling bzip2 v0.3.3 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling syn-mid v0.5.0 [INFO] [stderr] Compiling serde_derive v1.0.110 [INFO] [stderr] Compiling snafu-derive v0.6.8 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling thiserror-impl v1.0.19 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling structopt-derive v0.4.7 [INFO] [stderr] Compiling thiserror v1.0.19 [INFO] [stderr] Compiling niffler v2.0.1 [INFO] [stderr] Compiling snafu v0.6.8 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling multimap v0.6.0 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling structopt v0.3.14 [INFO] [stderr] Compiling yacrd v0.6.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 47s [INFO] running `Command { std: "docker" "inspect" "21e787e0f2fb7f8a02eec44b5fb50b9404ccd13a1f2f1f3b87d36187955d5164", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "21e787e0f2fb7f8a02eec44b5fb50b9404ccd13a1f2f1f3b87d36187955d5164", kill_on_drop: false }` [INFO] [stdout] 21e787e0f2fb7f8a02eec44b5fb50b9404ccd13a1f2f1f3b87d36187955d5164 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 3b2bb1dc72d50b1a0144bbc7fa52321bb8daf8d4dfb2d9a8ee3fb480aafb5d1b [INFO] running `Command { std: "docker" "start" "-a" "3b2bb1dc72d50b1a0144bbc7fa52321bb8daf8d4dfb2d9a8ee3fb480aafb5d1b", kill_on_drop: false }` [INFO] [stderr] Compiling remove_dir_all v0.5.2 [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling yacrd v0.6.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 6.69s [INFO] running `Command { std: "docker" "inspect" "3b2bb1dc72d50b1a0144bbc7fa52321bb8daf8d4dfb2d9a8ee3fb480aafb5d1b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3b2bb1dc72d50b1a0144bbc7fa52321bb8daf8d4dfb2d9a8ee3fb480aafb5d1b", kill_on_drop: false }` [INFO] [stdout] 3b2bb1dc72d50b1a0144bbc7fa52321bb8daf8d4dfb2d9a8ee3fb480aafb5d1b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] ac94fdb35d398db9b1bba5fa9aa909331b2f82aee19d63fd049a06e4c3d65863 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ac94fdb35d398db9b1bba5fa9aa909331b2f82aee19d63fd049a06e4c3d65863", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.18s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/yacrd-2ea179698fbe63b2 [INFO] [stdout] [INFO] [stdout] running 50 tests [INFO] [stdout] test editor::extract::tests::fasta_file ... ok [INFO] [stdout] test editor::extract::tests::fastq_file ... ok [INFO] [stdout] test editor::extract::tests::m4_file ... ok [INFO] [stdout] test editor::filter::tests::fastq_file ... ok [INFO] [stdout] test editor::filter::tests::fasta_file ... ok [INFO] [stdout] test editor::scrubbing::tests::fastq_keep_middle ... ok [INFO] [stdout] test editor::scrubbing::tests::fasta_keep_middle ... ok [INFO] [stdout] test editor::scrubbing::tests::fastq_keep_begin_end ... ok [INFO] [stdout] test editor::tests::read_type_assignation ... ok [INFO] [stdout] test editor::filter::tests::paf_file ... ok [INFO] [stdout] test editor::filter::tests::m4_file ... ok [INFO] [stdout] test editor::scrubbing::tests::fasta_keep_begin_end ... ok [INFO] [stdout] test util::tests::file_type::fa ... ok [INFO] [stdout] test util::tests::file_type::fa_with_nopoint ... ok [INFO] [stdout] test reads2ovl::tests::m4 ... ok [INFO] [stdout] test util::tests::file_type::fasta ... ok [INFO] [stdout] test util::tests::file_type::fastq_with_other_ext ... ok [INFO] [stdout] test editor::extract::tests::paf_file ... ok [INFO] [stdout] test util::tests::file_type::fasta_with_nopoint ... ok [INFO] [stdout] test stack::tests::from_overlap ... ok [INFO] [stdout] test util::tests::file_type::fq_with_other_ext ... ok [INFO] [stdout] test util::tests::file_type::fastq ... ok [INFO] [stdout] test util::tests::file_type::fastq_with_nopoint ... ok [INFO] [stdout] test util::tests::file_type::fq_with_nopoint ... ok [INFO] [stdout] test util::tests::file_type::mhap_with_nopoint ... ok [INFO] [stdout] test util::tests::file_type::mhap_with_other_ext ... ok [INFO] [stdout] test stack::tests::from_report ... ok [INFO] [stdout] test util::tests::file_type::fasta_with_other_ext ... ok [INFO] [stdout] test util::tests::file_type::m4_with_nopoint ... ok [INFO] [stdout] test util::tests::file_type::paf_with_nopoint ... ok [INFO] [stdout] test util::tests::file_type::m4_with_other_ext ... ok [INFO] [stdout] test util::tests::file_type::yacrd_overlap_with_nopoint ... ok [INFO] [stdout] test util::tests::file_type::paf ... ok [INFO] [stdout] test util::tests::file_type::yacrd_overlap ... ok [INFO] [stdout] test util::tests::file_type::paf_with_other_ext ... ok [INFO] [stdout] test util::tests::file_type::mhap ... ok [INFO] [stdout] test util::tests::file_type::yacrd_overlap_with_other_ext ... ok [INFO] [stdout] test stack::tests::coverage_upper_than_0 ... ok [INFO] [stdout] test reads2ovl::tests::paf ... ok [INFO] [stdout] test util::tests::file_type::m4 ... ok [INFO] [stdout] test util::tests::str2u32::succeeded ... ok [INFO] [stdout] test util::tests::str2u32::failed ... ok [INFO] [stdout] test util::tests::str2u64::failed ... ok [INFO] [stdout] test util::tests::str2u64::succeeded ... ok [INFO] [stdout] test util::tests::file_type::fq ... ok [INFO] [stdout] test util::tests::file_type::fa_with_other_ext ... ok [INFO] [stdout] test util::tests::str2usize::succeeded ... ok [INFO] [stdout] test editor::split::tests::fasta_file ... ok [INFO] [stdout] test util::tests::str2usize::failed ... ok [INFO] [stdout] test editor::split::tests::fastq_file ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 50 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "ac94fdb35d398db9b1bba5fa9aa909331b2f82aee19d63fd049a06e4c3d65863", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ac94fdb35d398db9b1bba5fa9aa909331b2f82aee19d63fd049a06e4c3d65863", kill_on_drop: false }` [INFO] [stdout] ac94fdb35d398db9b1bba5fa9aa909331b2f82aee19d63fd049a06e4c3d65863