[INFO] fetching crate ncbitaxonomy 1.0.7... [INFO] testing ncbitaxonomy-1.0.7 against master#8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e for pr-74409 [INFO] extracting crate ncbitaxonomy 1.0.7 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate ncbitaxonomy 1.0.7 on toolchain 8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate ncbitaxonomy 1.0.7 [INFO] finished tweaking crates.io crate ncbitaxonomy 1.0.7 [INFO] tweaked toml for crates.io crate ncbitaxonomy 1.0.7 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate crates.io crate ncbitaxonomy 1.0.7 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 421bc45547c8438954af0e154359d140b7a79ba126dc704bc663dd2e52e38bd0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "421bc45547c8438954af0e154359d140b7a79ba126dc704bc663dd2e52e38bd0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "421bc45547c8438954af0e154359d140b7a79ba126dc704bc663dd2e52e38bd0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "421bc45547c8438954af0e154359d140b7a79ba126dc704bc663dd2e52e38bd0", kill_on_drop: false }` [INFO] [stdout] 421bc45547c8438954af0e154359d140b7a79ba126dc704bc663dd2e52e38bd0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6ec0266134a7a66b9e6edaa3d472a0ff290bc8256add575639a4ab1997eb2009 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6ec0266134a7a66b9e6edaa3d472a0ff290bc8256add575639a4ab1997eb2009", kill_on_drop: false }` [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.31 [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling serde v1.0.112 [INFO] [stderr] Compiling arrayvec v0.4.12 [INFO] [stderr] Compiling nodrop v0.1.14 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling unicode-width v0.1.7 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling strsim v0.7.0 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling libsqlite3-sys v0.18.0 [INFO] [stderr] Compiling owning_ref v0.4.1 [INFO] [stderr] Compiling miniz_oxide v0.3.7 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling textwrap v0.10.0 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling proc-macro2 v1.0.18 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling lock_api v0.1.5 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling parking_lot_core v0.3.1 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling crossbeam-epoch v0.6.1 [INFO] [stderr] Compiling crossbeam-epoch v0.5.2 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling backtrace v0.3.49 [INFO] [stderr] Compiling slice-deque v0.1.16 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.0.14 [INFO] [stderr] Compiling crossbeam-deque v0.5.2 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling buf_redux v0.7.1 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling parking_lot v0.6.4 [INFO] [stderr] Compiling crossbeam-channel v0.2.6 [INFO] [stderr] Compiling crossbeam v0.4.1 [INFO] [stderr] Compiling dotenv v0.9.0 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling serde_derive v1.0.112 [INFO] [stderr] Compiling diesel_derives v1.4.1 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling thiserror-impl v1.0.20 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling thiserror v1.0.20 [INFO] [stderr] Compiling indextree v3.3.0 [INFO] [stderr] Compiling diesel v1.4.5 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling seq_io v0.3.0 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling migrations_internals v1.4.1 [INFO] [stderr] Compiling migrations_macros v1.4.2 [INFO] [stderr] Compiling diesel_migrations v1.4.0 [INFO] [stderr] Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 08s [INFO] running `Command { std: "docker" "inspect" "6ec0266134a7a66b9e6edaa3d472a0ff290bc8256add575639a4ab1997eb2009", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6ec0266134a7a66b9e6edaa3d472a0ff290bc8256add575639a4ab1997eb2009", kill_on_drop: false }` [INFO] [stdout] 6ec0266134a7a66b9e6edaa3d472a0ff290bc8256add575639a4ab1997eb2009 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 036e798e2736430e9032b6a1717b261cca5da033660fd9bfc91b02a43bfebba9 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "036e798e2736430e9032b6a1717b261cca5da033660fd9bfc91b02a43bfebba9", kill_on_drop: false }` [INFO] [stderr] Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 8.81s [INFO] running `Command { std: "docker" "inspect" "036e798e2736430e9032b6a1717b261cca5da033660fd9bfc91b02a43bfebba9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "036e798e2736430e9032b6a1717b261cca5da033660fd9bfc91b02a43bfebba9", kill_on_drop: false }` [INFO] [stdout] 036e798e2736430e9032b6a1717b261cca5da033660fd9bfc91b02a43bfebba9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 1b1a2ee38a5f34fa985f1a8b57a5fe55e5e3a06ddc6fcdb9c5273e2463a3008a [INFO] running `Command { std: "docker" "start" "-a" "1b1a2ee38a5f34fa985f1a8b57a5fe55e5e3a06ddc6fcdb9c5273e2463a3008a", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.21s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/ncbitaxonomy-4634e257560b8dbd [INFO] [stdout] [INFO] [stdout] running 23 tests [INFO] [stdout] test tests::get_lineage_sqlite ... ok [INFO] [stdout] test tests::sqlite_contains_name ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid ... ok [INFO] [stdout] test tests::sqlite_descendants ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid_canonical ... ok [INFO] [stdout] test tests::distance_to_common_ancestor ... ok [INFO] [stdout] test tests::get_id_by_node ... ok [INFO] [stdout] test tests::get_node_by_id ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_canonical ... ok [INFO] [stdout] test tests::descendants ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor ... ok [INFO] [stdout] test tests::get_lineage ... ok [INFO] [stdout] test tests::get_name_by_id ... ok [INFO] [stdout] test tests::taxid_descendants ... ok [INFO] [stdout] test tests::contains_id ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_canonical ... ok [INFO] [stdout] test tests::traversal ... ok [INFO] [stdout] test tests::sqlite_get_name_by_id ... ok [INFO] [stdout] test tests::sqlite_contains_id ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_taxid_canonical ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_taxid ... ok [INFO] [stdout] test tests::contains_name ... ok [INFO] [stdout] test tests::sqlite_taxid_descendants ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 23 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/taxonomy_filter_fastq-741afa7f466539d1 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/taxonomy_filter_refseq-b328fff9be3a898d [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/taxonomy_util-b74b845a734f613c [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests ncbitaxonomy [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib.rs - NcbiFileTaxonomy::from_ncbi_files (line 105) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "1b1a2ee38a5f34fa985f1a8b57a5fe55e5e3a06ddc6fcdb9c5273e2463a3008a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1b1a2ee38a5f34fa985f1a8b57a5fe55e5e3a06ddc6fcdb9c5273e2463a3008a", kill_on_drop: false }` [INFO] [stdout] 1b1a2ee38a5f34fa985f1a8b57a5fe55e5e3a06ddc6fcdb9c5273e2463a3008a