[INFO] crate global-supertrees 0.1.0 is already in cache [INFO] testing global-supertrees-0.1.0 against master#8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e for pr-74409 [INFO] extracting crate global-supertrees 0.1.0 into /workspace/builds/worker-14/source [INFO] validating manifest of crates.io crate global-supertrees 0.1.0 on toolchain 8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate global-supertrees 0.1.0 [INFO] finished tweaking crates.io crate global-supertrees 0.1.0 [INFO] tweaked toml for crates.io crate global-supertrees 0.1.0 written to /workspace/builds/worker-14/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 63586185507a35d5836b3f9981517c7b0796c426b0afd3f2dd4a094a0eb5878f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "63586185507a35d5836b3f9981517c7b0796c426b0afd3f2dd4a094a0eb5878f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "63586185507a35d5836b3f9981517c7b0796c426b0afd3f2dd4a094a0eb5878f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "63586185507a35d5836b3f9981517c7b0796c426b0afd3f2dd4a094a0eb5878f", kill_on_drop: false }` [INFO] [stdout] 63586185507a35d5836b3f9981517c7b0796c426b0afd3f2dd4a094a0eb5878f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0a0fb6fd13a99153b2e29684cbc5e49bdf9fe7174b7c4ba7351f90477ff5d11b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "0a0fb6fd13a99153b2e29684cbc5e49bdf9fe7174b7c4ba7351f90477ff5d11b", kill_on_drop: false }` [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling syn v1.0.35 [INFO] [stderr] Compiling libc v0.2.73 [INFO] [stderr] Compiling serde_derive v1.0.114 [INFO] [stderr] Compiling rayon-core v1.7.1 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.5 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling rayon v1.3.1 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling crossbeam-queue v0.2.3 [INFO] [stderr] Compiling crossbeam-deque v0.7.3 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling serde v1.0.114 [INFO] [stderr] Compiling bincode v1.3.1 [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:54:92 [INFO] [stdout] | [INFO] [stdout] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:61:82 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/tree_merging.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trees` [INFO] [stdout] --> src/main.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let distance_matrices: Vec = [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `merge_distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:102:4 [INFO] [stdout] | [INFO] [stdout] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 32.19s [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "0a0fb6fd13a99153b2e29684cbc5e49bdf9fe7174b7c4ba7351f90477ff5d11b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0a0fb6fd13a99153b2e29684cbc5e49bdf9fe7174b7c4ba7351f90477ff5d11b", kill_on_drop: false }` [INFO] [stdout] 0a0fb6fd13a99153b2e29684cbc5e49bdf9fe7174b7c4ba7351f90477ff5d11b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ab1412d35330d6e48033a4d0a5eccf363af4838da6186dcaa6923724dd13cdb6 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ab1412d35330d6e48033a4d0a5eccf363af4838da6186dcaa6923724dd13cdb6", kill_on_drop: false }` [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:54:92 [INFO] [stdout] | [INFO] [stdout] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:61:82 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/tree_merging.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trees` [INFO] [stdout] --> src/main.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let distance_matrices: Vec = [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `merge_distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:102:4 [INFO] [stdout] | [INFO] [stdout] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 4.66s [INFO] running `Command { std: "docker" "inspect" "ab1412d35330d6e48033a4d0a5eccf363af4838da6186dcaa6923724dd13cdb6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ab1412d35330d6e48033a4d0a5eccf363af4838da6186dcaa6923724dd13cdb6", kill_on_drop: false }` [INFO] [stdout] ab1412d35330d6e48033a4d0a5eccf363af4838da6186dcaa6923724dd13cdb6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 96e2ac0496956878aea85755c8ad8bc12b86791fb09edd71359cf0b55854576c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "96e2ac0496956878aea85755c8ad8bc12b86791fb09edd71359cf0b55854576c", kill_on_drop: false }` [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:54:92 [INFO] [stderr] | [INFO] [stderr] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:61:82 [INFO] [stderr] | [INFO] [stderr] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] [INFO] [stderr] warning: unused import: `rayon::prelude` [INFO] [stderr] --> src/tree_merging.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use rayon::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `trees` [INFO] [stderr] --> src/main.rs:98:9 [INFO] [stderr] | [INFO] [stderr] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `distance_matrices` [INFO] [stderr] --> src/tree_merging.rs:10:9 [INFO] [stderr] | [INFO] [stderr] 10 | let distance_matrices: Vec = [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `merge_distance_matrices` [INFO] [stderr] --> src/tree_merging.rs:102:4 [INFO] [stderr] | [INFO] [stderr] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 6 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.35s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/global_supertrees-edd8e957746283e5 [INFO] [stdout] [INFO] [stdout] running 16 tests [INFO] [stdout] test tests::tests::test_load_tree_file ... ok [INFO] [stdout] test tests::tests::test_find_first_zero ... ok [INFO] [stdout] test tests::tests::test_find_first_common_ancestor ... ok [INFO] [stdout] test tests::tests::test_get_levels_from_root ... ok [INFO] [stdout] test tests::tests::test_to_dot ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_3 ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_2 ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_1 ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_simple ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium_nested ... ok [INFO] [stdout] test tests::tests::test_batch_id_tax_mapping ... FAILED [INFO] [stdout] test tests::tests::test_merge_organisms ... FAILED [INFO] [stdout] test tests::tests::test_get_partial_tree ... ok [INFO] [stdout] test tests::tests::test_tree_merging ... ok [INFO] [stdout] test tests::tests::test_neighbour_joining ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_batch_id_tax_mapping stdout ---- [INFO] [stdout] thread 'tests::tests::test_batch_id_tax_mapping' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/uniprot.rs:34:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55afa7788fa5 - backtrace::backtrace::libunwind::trace::hea89dfbbfe67f40d [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x55afa7788fa5 - backtrace::backtrace::trace_unsynchronized::h0513dd713d7644d4 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x55afa7788fa5 - std::sys_common::backtrace::_print_fmt::h040abae64e4a24a9 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x55afa7788fa5 - ::fmt::hb4bdb37c3c335733 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x55afa77b2fdc - core::fmt::write::h540ac4a6a1232abc [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x55afa753ea95 - std::io::Write::write_fmt::h4be0daababb55bba [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/io/mod.rs:1539 [INFO] [stdout] 6: 0x55afa7783461 - std::io::impls::>::write_fmt::h83c1e1aa73f374f5 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x55afa778b710 - std::sys_common::backtrace::_print::hb55cc635eaf1882e [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x55afa778b710 - std::sys_common::backtrace::print::h2b2218fa55714084 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x55afa778b710 - std::panicking::default_hook::{{closure}}::h578517c025765cf3 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x55afa778b40a - std::panicking::default_hook::h4cafc94c2fc640fb [INFO] [stdout] at src/libstd/panicking.rs:214 [INFO] [stdout] 11: 0x55afa778bd53 - std::panicking::rust_panic_with_hook::h3eeb5001beeca5c3 [INFO] [stdout] at src/libstd/panicking.rs:526 [INFO] [stdout] 12: 0x55afa778b94b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:437 [INFO] [stdout] 13: 0x55afa77b0c61 - core::panicking::panic_fmt::h78830ea6a34e7206 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 14: 0x55afa77b0a83 - core::option::expect_none_failed::hf79bbb5ca7e09e08 [INFO] [stdout] at src/libcore/option.rs:1269 [INFO] [stdout] 15: 0x55afa750c0c9 - core::result::Result::expect::h8a3035cf57611308 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/result.rs:963 [INFO] [stdout] 16: 0x55afa7510012 - global_supertrees::uniprot::load_mapping_file::h1a616867d4e78b4a [INFO] [stdout] at src/uniprot.rs:34 [INFO] [stdout] 17: 0x55afa7530800 - global_supertrees::tests::tests::test_batch_id_tax_mapping::hf939fa4036083056 [INFO] [stdout] at src/tests.rs:230 [INFO] [stdout] 18: 0x55afa75306ba - global_supertrees::tests::tests::test_batch_id_tax_mapping::{{closure}}::hd584a0f5fa2bcf2f [INFO] [stdout] at src/tests.rs:227 [INFO] [stdout] 19: 0x55afa7506bee - core::ops::function::FnOnce::call_once::h94a7cf508a93c566 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/ops/function.rs:233 [INFO] [stdout] 20: 0x55afa756600c - as core::ops::function::FnOnce>::call_once::h8340ba6798e0c4ff [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 21: 0x55afa756600c - as core::ops::function::FnOnce<()>>::call_once::h5590e98676605094 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:318 [INFO] [stdout] 22: 0x55afa756600c - std::panicking::try::do_call::hd8680a2dbb0ed3c4 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:348 [INFO] [stdout] 23: 0x55afa756600c - std::panicking::try::h46b4de2d705e7a8d [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:325 [INFO] [stdout] 24: 0x55afa756600c - std::panic::catch_unwind::h059b3f06991e0a9c [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:394 [INFO] [stdout] 25: 0x55afa756600c - test::run_test_in_process::h5ae08a65430494a4 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 26: 0x55afa756600c - test::run_test::run_test_inner::{{closure}}::h4b36073838376ae8 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 27: 0x55afa753df86 - std::sys_common::backtrace::__rust_begin_short_backtrace::h0169d0be588b8bf0 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 28: 0x55afa7542f75 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h71bfc37e887d3973 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/thread/mod.rs:475 [INFO] [stdout] 29: 0x55afa7542f75 - as core::ops::function::FnOnce<()>>::call_once::h36c65072907dc180 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:318 [INFO] [stdout] 30: 0x55afa7542f75 - std::panicking::try::do_call::h4e0f426e17cd216c [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:348 [INFO] [stdout] 31: 0x55afa7542f75 - std::panicking::try::hd05e4ef6b4303d29 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:325 [INFO] [stdout] 32: 0x55afa7542f75 - std::panic::catch_unwind::h19a1127ec729c5dd [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:394 [INFO] [stdout] 33: 0x55afa7542f75 - std::thread::Builder::spawn_unchecked::{{closure}}::h011300735f06b1e2 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/thread/mod.rs:474 [INFO] [stdout] 34: 0x55afa7542f75 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h1e3c55f31f1d122e [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/ops/function.rs:233 [INFO] [stdout] 35: 0x55afa779202a - as core::ops::function::FnOnce>::call_once::hc0e15d78a519721e [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 36: 0x55afa779202a - as core::ops::function::FnOnce>::call_once::h211da8fffb09f192 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 37: 0x55afa779202a - std::sys::unix::thread::Thread::new::thread_start::h29594ddebf23e421 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 38: 0x7ff2c86b8609 - start_thread [INFO] [stdout] 39: 0x7ff2c85c4103 - __clone [INFO] [stdout] 40: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_merge_organisms stdout ---- [INFO] [stdout] thread 'tests::tests::test_merge_organisms' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/uniprot.rs:34:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x55afa7788fa5 - backtrace::backtrace::libunwind::trace::hea89dfbbfe67f40d [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x55afa7788fa5 - backtrace::backtrace::trace_unsynchronized::h0513dd713d7644d4 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x55afa7788fa5 - std::sys_common::backtrace::_print_fmt::h040abae64e4a24a9 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x55afa7788fa5 - ::fmt::hb4bdb37c3c335733 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x55afa77b2fdc - core::fmt::write::h540ac4a6a1232abc [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x55afa753ea95 - std::io::Write::write_fmt::h4be0daababb55bba [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/io/mod.rs:1539 [INFO] [stdout] 6: 0x55afa7783461 - std::io::impls::>::write_fmt::h83c1e1aa73f374f5 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x55afa778b710 - std::sys_common::backtrace::_print::hb55cc635eaf1882e [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x55afa778b710 - std::sys_common::backtrace::print::h2b2218fa55714084 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x55afa778b710 - std::panicking::default_hook::{{closure}}::h578517c025765cf3 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x55afa778b40a - std::panicking::default_hook::h4cafc94c2fc640fb [INFO] [stdout] at src/libstd/panicking.rs:214 [INFO] [stdout] 11: 0x55afa778bd53 - std::panicking::rust_panic_with_hook::h3eeb5001beeca5c3 [INFO] [stdout] at src/libstd/panicking.rs:526 [INFO] [stdout] 12: 0x55afa778b94b - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:437 [INFO] [stdout] 13: 0x55afa77b0c61 - core::panicking::panic_fmt::h78830ea6a34e7206 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 14: 0x55afa77b0a83 - core::option::expect_none_failed::hf79bbb5ca7e09e08 [INFO] [stdout] at src/libcore/option.rs:1269 [INFO] [stdout] 15: 0x55afa750c0c9 - core::result::Result::expect::h8a3035cf57611308 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/result.rs:963 [INFO] [stdout] 16: 0x55afa7510012 - global_supertrees::uniprot::load_mapping_file::h1a616867d4e78b4a [INFO] [stdout] at src/uniprot.rs:34 [INFO] [stdout] 17: 0x55afa7530a88 - global_supertrees::tests::tests::test_merge_organisms::hc20c6a0e36763c28 [INFO] [stdout] at src/tests.rs:237 [INFO] [stdout] 18: 0x55afa7530a2a - global_supertrees::tests::tests::test_merge_organisms::{{closure}}::h12521bcb422275c9 [INFO] [stdout] at src/tests.rs:235 [INFO] [stdout] 19: 0x55afa7506d0e - core::ops::function::FnOnce::call_once::hf16d9db0e0c91a03 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/ops/function.rs:233 [INFO] [stdout] 20: 0x55afa756600c - as core::ops::function::FnOnce>::call_once::h8340ba6798e0c4ff [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 21: 0x55afa756600c - as core::ops::function::FnOnce<()>>::call_once::h5590e98676605094 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:318 [INFO] [stdout] 22: 0x55afa756600c - std::panicking::try::do_call::hd8680a2dbb0ed3c4 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:348 [INFO] [stdout] 23: 0x55afa756600c - std::panicking::try::h46b4de2d705e7a8d [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:325 [INFO] [stdout] 24: 0x55afa756600c - std::panic::catch_unwind::h059b3f06991e0a9c [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:394 [INFO] [stdout] 25: 0x55afa756600c - test::run_test_in_process::h5ae08a65430494a4 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 26: 0x55afa756600c - test::run_test::run_test_inner::{{closure}}::h4b36073838376ae8 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 27: 0x55afa753df86 - std::sys_common::backtrace::__rust_begin_short_backtrace::h0169d0be588b8bf0 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 28: 0x55afa7542f75 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h71bfc37e887d3973 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/thread/mod.rs:475 [INFO] [stdout] 29: 0x55afa7542f75 - as core::ops::function::FnOnce<()>>::call_once::h36c65072907dc180 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:318 [INFO] [stdout] 30: 0x55afa7542f75 - std::panicking::try::do_call::h4e0f426e17cd216c [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:348 [INFO] [stdout] 31: 0x55afa7542f75 - std::panicking::try::hd05e4ef6b4303d29 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:325 [INFO] [stdout] 32: 0x55afa7542f75 - std::panic::catch_unwind::h19a1127ec729c5dd [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:394 [INFO] [stdout] 33: 0x55afa7542f75 - std::thread::Builder::spawn_unchecked::{{closure}}::h011300735f06b1e2 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/thread/mod.rs:474 [INFO] [stdout] 34: 0x55afa7542f75 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h1e3c55f31f1d122e [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/ops/function.rs:233 [INFO] [stdout] 35: 0x55afa779202a - as core::ops::function::FnOnce>::call_once::hc0e15d78a519721e [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 36: 0x55afa779202a - as core::ops::function::FnOnce>::call_once::h211da8fffb09f192 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 37: 0x55afa779202a - std::sys::unix::thread::Thread::new::thread_start::h29594ddebf23e421 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 38: 0x7ff2c86b8609 - start_thread [INFO] [stdout] 39: 0x7ff2c85c4103 - __clone [INFO] [stdout] 40: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::tests::test_batch_id_tax_mapping [INFO] [stdout] tests::tests::test_merge_organisms [INFO] [stdout] [INFO] [stdout] test result: FAILED. 14 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--bin global-supertrees' [INFO] running `Command { std: "docker" "inspect" "96e2ac0496956878aea85755c8ad8bc12b86791fb09edd71359cf0b55854576c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "96e2ac0496956878aea85755c8ad8bc12b86791fb09edd71359cf0b55854576c", kill_on_drop: false }` [INFO] [stdout] 96e2ac0496956878aea85755c8ad8bc12b86791fb09edd71359cf0b55854576c