[INFO] crate gchemol 0.0.41 is already in cache
[INFO] testing gchemol-0.0.41 against master#8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e for pr-74409
[INFO] extracting crate gchemol 0.0.41 into /workspace/builds/worker-2/source
[INFO] validating manifest of crates.io crate gchemol 0.0.41 on toolchain 8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol 0.0.41
[INFO] finished tweaking crates.io crate gchemol 0.0.41
[INFO] tweaked toml for crates.io crate gchemol 0.0.41 written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 35fec4493f1f387acec728ab25b620509d0b3111cd7290b60bec5e1e0693a5a6
[INFO] running `Command { std: "docker" "start" "-a" "35fec4493f1f387acec728ab25b620509d0b3111cd7290b60bec5e1e0693a5a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "35fec4493f1f387acec728ab25b620509d0b3111cd7290b60bec5e1e0693a5a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "35fec4493f1f387acec728ab25b620509d0b3111cd7290b60bec5e1e0693a5a6", kill_on_drop: false }`
[INFO] [stdout] 35fec4493f1f387acec728ab25b620509d0b3111cd7290b60bec5e1e0693a5a6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 0ca62298e8fe076da92a8ace7e2a629fb434f8aad92aa6494d38cce3ca82cb27
[INFO] running `Command { std: "docker" "start" "-a" "0ca62298e8fe076da92a8ace7e2a629fb434f8aad92aa6494d38cce3ca82cb27", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.19
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling syn v1.0.35
[INFO] [stderr]    Compiling libc v0.2.73
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling serde_derive v1.0.114
[INFO] [stderr]    Compiling serde v1.0.114
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling regex-syntax v0.6.18
[INFO] [stderr]    Compiling log v0.4.11
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling ppv-lite86 v0.2.8
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling rayon-core v1.7.1
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling either v1.5.3
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling anyhow v1.0.31
[INFO] [stderr]    Compiling termcolor v1.1.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling ucd-trie v0.1.3
[INFO] [stderr]    Compiling serde_json v1.0.56
[INFO] [stderr]    Compiling unic-common v0.9.0
[INFO] [stderr]    Compiling lexical-core v0.7.4
[INFO] [stderr]    Compiling itoa v0.4.6
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling unic-char-range v0.9.0
[INFO] [stderr]    Compiling arrayvec v0.5.1
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling humansize v1.1.0
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling unic-ucd-version v0.9.0
[INFO] [stderr]    Compiling pest v2.1.3
[INFO] [stderr]    Compiling unic-char-property v0.9.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.3
[INFO] [stderr]    Compiling proc-macro-error v1.0.3
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling memoffset v0.5.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling rayon v1.3.1
[INFO] [stderr]    Compiling hashbrown v0.8.1
[INFO] [stderr]    Compiling indexmap v1.5.0
[INFO] [stderr]    Compiling generic-array v0.13.2
[INFO] [stderr]    Compiling unic-ucd-segment v0.9.0
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling time v0.1.43
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling unic-segment v0.9.0
[INFO] [stderr]    Compiling crossbeam-queue v0.2.3
[INFO] [stderr]    Compiling clap v2.33.1
[INFO] [stderr]    Compiling pest_meta v2.1.3
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling crossbeam-deque v0.7.3
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling chrono v0.4.13
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling rand_distr v0.2.2
[INFO] [stderr]    Compiling tempfile v3.1.0
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.0
[INFO] [stderr]    Compiling globset v0.4.5
[INFO] [stderr]    Compiling pretty_env_logger v0.4.0
[INFO] [stderr]    Compiling ignore v0.4.16
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr]    Compiling pest_generator v2.1.3
[INFO] [stderr]    Compiling chrono-tz v0.5.2
[INFO] [stderr]    Compiling globwalk v0.8.0
[INFO] [stderr]    Compiling pest_derive v2.1.0
[INFO] [stderr]    Compiling structopt-derive v0.4.8
[INFO] [stderr]    Compiling structopt v0.3.15
[INFO] [stderr]    Compiling toml v0.5.6
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling envy v0.4.1
[INFO] [stderr]    Compiling bimap v0.4.0
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling handlebars v3.3.0
[INFO] [stderr]    Compiling tera v1.3.1
[INFO] [stderr]    Compiling gchemol-gut v0.1.3
[INFO] [stderr]    Compiling gchemol-parser v0.2.1
[INFO] [stderr]    Compiling gchemol-graph v0.1.1
[INFO] [stderr]    Compiling nalgebra v0.20.0
[INFO] [stderr]    Compiling vecfx v0.1.2
[INFO] [stderr]    Compiling octree v0.1.0
[INFO] [stderr]    Compiling gchemol-lattice v0.1.0
[INFO] [stderr]    Compiling gchemol-geometry v0.0.39
[INFO] [stderr]    Compiling gchemol-neighbors v0.1.0
[INFO] [stderr]    Compiling gchemol-core v0.0.42
[INFO] [stderr]    Compiling gchemol-readwrite v0.0.41
[INFO] [stderr]    Compiling gchemol v0.0.41 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 25s
[INFO] running `Command { std: "docker" "inspect" "0ca62298e8fe076da92a8ace7e2a629fb434f8aad92aa6494d38cce3ca82cb27", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0ca62298e8fe076da92a8ace7e2a629fb434f8aad92aa6494d38cce3ca82cb27", kill_on_drop: false }`
[INFO] [stdout] 0ca62298e8fe076da92a8ace7e2a629fb434f8aad92aa6494d38cce3ca82cb27
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] dab3e5ff5ff184657f70673fd007d773e3ffa32c2e6fbbaac1cef17c6c41b17a
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "dab3e5ff5ff184657f70673fd007d773e3ffa32c2e6fbbaac1cef17c6c41b17a", kill_on_drop: false }`
[INFO] [stderr]    Compiling gchemol v0.0.41 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `mol`
[INFO] [stdout]   --> tests/io.rs:44:9
[INFO] [stdout]    |
[INFO] [stdout] 44 |     for mol in gchemol::io::read(&f).expect("read mol2") {
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_mol`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol::prelude::*`
[INFO] [stdout]  --> tests/molecule.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use gchemol::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 10.58s
[INFO] running `Command { std: "docker" "inspect" "dab3e5ff5ff184657f70673fd007d773e3ffa32c2e6fbbaac1cef17c6c41b17a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dab3e5ff5ff184657f70673fd007d773e3ffa32c2e6fbbaac1cef17c6c41b17a", kill_on_drop: false }`
[INFO] [stdout] dab3e5ff5ff184657f70673fd007d773e3ffa32c2e6fbbaac1cef17c6c41b17a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 6ac66d424c2af95ee3565357080637f5d8b925be401817736ef4ecde14d09e43
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "6ac66d424c2af95ee3565357080637f5d8b925be401817736ef4ecde14d09e43", kill_on_drop: false }`
[INFO] [stderr] warning: unused variable: `mol`
[INFO] [stderr]   --> tests/io.rs:44:9
[INFO] [stderr]    |
[INFO] [stderr] 44 |     for mol in gchemol::io::read(&f).expect("read mol2") {
[INFO] [stderr]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_mol`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: 1 warning emitted
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `gchemol::prelude::*`
[INFO] [stderr]  --> tests/molecule.rs:3:5
[INFO] [stderr]   |
[INFO] [stderr] 3 | use gchemol::prelude::*;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: 1 warning emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.23s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/gchemol-c6a2e90f73a27d7f
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/crystal-8f3c10f2e6137e49
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test test_crystal ... ok
[INFO] [stdout] test test_supercell ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/io-9235dc50f9fd6483
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test io_from_file_to_file ... ok
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/molecule-632a6868b22a1a55
[INFO] [stdout] test read_write_molecules ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test test_new_molecule ... ok
[INFO] [stdout] test test_atom_data ... ok
[INFO] [stdout] test test_molecule_properties ... ok
[INFO] [stdout] test test_new_atom ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests gchemol
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "6ac66d424c2af95ee3565357080637f5d8b925be401817736ef4ecde14d09e43", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6ac66d424c2af95ee3565357080637f5d8b925be401817736ef4ecde14d09e43", kill_on_drop: false }`
[INFO] [stdout] 6ac66d424c2af95ee3565357080637f5d8b925be401817736ef4ecde14d09e43