[INFO] fetching crate flann 0.1.0... [INFO] testing flann-0.1.0 against master#8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e for pr-74409 [INFO] extracting crate flann 0.1.0 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate flann 0.1.0 on toolchain 8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann 0.1.0 [INFO] finished tweaking crates.io crate flann 0.1.0 [INFO] tweaked toml for crates.io crate flann 0.1.0 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] b47b88249928b09c0a906c8da5e1230c2ef070d75c186625031db54bced86b28 [INFO] running `Command { std: "docker" "start" "-a" "b47b88249928b09c0a906c8da5e1230c2ef070d75c186625031db54bced86b28", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b47b88249928b09c0a906c8da5e1230c2ef070d75c186625031db54bced86b28", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b47b88249928b09c0a906c8da5e1230c2ef070d75c186625031db54bced86b28", kill_on_drop: false }` [INFO] [stdout] b47b88249928b09c0a906c8da5e1230c2ef070d75c186625031db54bced86b28 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 15de3b133da1ea91848bd627f9b07d6b671bc2d2a9cdccfb60d96d9d1e240372 [INFO] running `Command { std: "docker" "start" "-a" "15de3b133da1ea91848bd627f9b07d6b671bc2d2a9cdccfb60d96d9d1e240372", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.73 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling cc v1.0.58 [INFO] [stderr] Compiling typenum v1.12.0 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling itertools v0.8.2 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling backtrace v0.3.50 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling generic-array v0.12.3 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling flann-sys v0.1.0 [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-11c0655988239b16/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-c9e2dfcbb79f7bec/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-c9e2dfcbb79f7bec/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-c9e2dfcbb79f7bec/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55558c7e6da5 - backtrace::backtrace::libunwind::trace::hea89dfbbfe67f40d [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55558c7e6da5 - backtrace::backtrace::trace_unsynchronized::h0513dd713d7644d4 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55558c7e6da5 - std::sys_common::backtrace::_print_fmt::h040abae64e4a24a9 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55558c7e6da5 - ::fmt::hb4bdb37c3c335733 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55558c811ccc - core::fmt::write::h540ac4a6a1232abc [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x55558c7e2eb2 - std::io::Write::write_fmt::h5ffa1b5a7703af47 [INFO] [stderr] at src/libstd/io/mod.rs:1539 [INFO] [stderr] 6: 0x55558c7e9ac0 - std::sys_common::backtrace::_print::hb55cc635eaf1882e [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55558c7e9ac0 - std::sys_common::backtrace::print::h2b2218fa55714084 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55558c7e9ac0 - std::panicking::default_hook::{{closure}}::h578517c025765cf3 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55558c7e980c - std::panicking::default_hook::h4cafc94c2fc640fb [INFO] [stderr] at src/libstd/panicking.rs:217 [INFO] [stderr] 10: 0x55558c7ea103 - std::panicking::rust_panic_with_hook::h3eeb5001beeca5c3 [INFO] [stderr] at src/libstd/panicking.rs:526 [INFO] [stderr] 11: 0x55558c7e9cfb - rust_begin_unwind [INFO] [stderr] at src/libstd/panicking.rs:437 [INFO] [stderr] 12: 0x55558c7e9c6b - std::panicking::begin_panic_fmt::hbb5e59697acc78ba [INFO] [stderr] at src/libstd/panicking.rs:391 [INFO] [stderr] 13: 0x55558c2bb497 - cmake::fail::h1d4028343c85801b [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885 [INFO] [stderr] 14: 0x55558c2badde - cmake::run::h2d0426a9261a8776 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863 [INFO] [stderr] 15: 0x55558c2b6797 - cmake::Config::build::hdd96215a41959857 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:698 [INFO] [stderr] 16: 0x55558c2b14e6 - build_script_build::main::hef88c2f6b52afdf2 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/build.rs:30 [INFO] [stderr] 17: 0x55558c2b390b - std::rt::lang_start::{{closure}}::h44fda82abe433b09 [INFO] [stderr] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/rt.rs:67 [INFO] [stderr] 18: 0x55558c7ea4d3 - std::rt::lang_start_internal::{{closure}}::h155f3093add35bce [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 19: 0x55558c7ea4d3 - std::panicking::try::do_call::h45f1f66ee6b987d6 [INFO] [stderr] at src/libstd/panicking.rs:348 [INFO] [stderr] 20: 0x55558c7ea4d3 - std::panicking::try::h0924dfb942cef7e3 [INFO] [stderr] at src/libstd/panicking.rs:325 [INFO] [stderr] 21: 0x55558c7ea4d3 - std::panic::catch_unwind::h883180846c5b53fa [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 22: 0x55558c7ea4d3 - std::rt::lang_start_internal::he9284d43a52786c5 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 23: 0x55558c2b38e7 - std::rt::lang_start::h34c0a61fde0afb87 [INFO] [stderr] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/rt.rs:67 [INFO] [stderr] 24: 0x55558c2b18ea - main [INFO] [stderr] 25: 0x7f1082f7e0b3 - __libc_start_main [INFO] [stderr] 26: 0x55558c2b119e - _start [INFO] [stderr] 27: 0x0 - [INFO] running `Command { std: "docker" "inspect" "15de3b133da1ea91848bd627f9b07d6b671bc2d2a9cdccfb60d96d9d1e240372", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "15de3b133da1ea91848bd627f9b07d6b671bc2d2a9cdccfb60d96d9d1e240372", kill_on_drop: false }` [INFO] [stdout] 15de3b133da1ea91848bd627f9b07d6b671bc2d2a9cdccfb60d96d9d1e240372