[INFO] updating cached repository https://github.com/sstadick/rumi
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }`
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 34a92eb41857a1a1c4c096f516a0271ed57d16f4
[INFO] testing sstadick/rumi against master#8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e for pr-74409
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi" "/workspace/builds/worker-3/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/sstadick/rumi on toolchain 8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/sstadick/rumi
[INFO] finished tweaking git repo https://github.com/sstadick/rumi
[INFO] tweaked toml for git repo https://github.com/sstadick/rumi written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate git repo https://github.com/sstadick/rumi already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ae217d123185126ccb302d2788c5c17fc6a9783812199ff4f1b01af99b8eb1a5
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "ae217d123185126ccb302d2788c5c17fc6a9783812199ff4f1b01af99b8eb1a5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ae217d123185126ccb302d2788c5c17fc6a9783812199ff4f1b01af99b8eb1a5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ae217d123185126ccb302d2788c5c17fc6a9783812199ff4f1b01af99b8eb1a5", kill_on_drop: false }`
[INFO] [stdout] ae217d123185126ccb302d2788c5c17fc6a9783812199ff4f1b01af99b8eb1a5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] ccc2a1736644b81fc87b7f4edb9017b67bb21cba79fcb198fab79d7742c09fb6
[INFO] running `Command { std: "docker" "start" "-a" "ccc2a1736644b81fc87b7f4edb9017b67bb21cba79fcb198fab79d7742c09fb6", kill_on_drop: false }`
[INFO] [stderr]    Compiling cfg-if v0.1.9
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling pkg-config v0.3.14
[INFO] [stderr]    Compiling regex-syntax v0.6.12
[INFO] [stderr]    Compiling syn v0.15.39
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling log v0.4.7
[INFO] [stderr]    Compiling proc-macro2 v1.0.6
[INFO] [stderr]    Compiling arrayvec v0.4.11
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling termcolor v1.0.5
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling nodrop v0.1.13
[INFO] [stderr]    Compiling bindgen v0.51.1
[INFO] [stderr]    Compiling doc-comment v0.3.1
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling serde v1.0.97
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling rayon-core v1.5.0
[INFO] [stderr]    Compiling rustc-demangle v0.1.16
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling basebits v1.2.0
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]    Compiling clang-sys v0.28.0
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling humantime v1.2.0
[INFO] [stderr]    Compiling backtrace-sys v0.1.32
[INFO] [stderr]    Compiling fs-utils v1.1.1
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling crossbeam-utils v0.6.6
[INFO] [stderr]    Compiling unicode-normalization v0.1.8
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling atty v0.2.13
[INFO] [stderr]    Compiling which v3.1.0
[INFO] [stderr]    Compiling num_cpus v1.10.1
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling lzma-sys v0.1.14
[INFO] [stderr]    Compiling bzip2-sys v0.1.7
[INFO] [stderr]    Compiling rustc-hash v1.0.1
[INFO] [stderr]    Compiling rustc_version v0.2.3
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling crossbeam-queue v0.1.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling aho-corasick v0.7.6
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling memoffset v0.5.1
[INFO] [stderr]    Compiling backtrace v0.3.40
[INFO] [stderr]    Compiling crossbeam-epoch v0.7.2
[INFO] [stderr]    Compiling idna v0.2.0
[INFO] [stderr]    Compiling crossbeam-deque v0.6.3
[INFO] [stderr]    Compiling cexpr v0.3.5
[INFO] [stderr]    Compiling url v2.1.0
[INFO] [stderr]    Compiling regex v1.3.1
[INFO] [stderr]    Compiling rayon v1.1.0
[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]    Compiling serde_derive v1.0.97
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]    Compiling snafu v0.5.0
[INFO] [stderr]    Compiling rust-htslib v0.26.0
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling rumi v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 59s
[INFO] running `Command { std: "docker" "inspect" "ccc2a1736644b81fc87b7f4edb9017b67bb21cba79fcb198fab79d7742c09fb6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ccc2a1736644b81fc87b7f4edb9017b67bb21cba79fcb198fab79d7742c09fb6", kill_on_drop: false }`
[INFO] [stdout] ccc2a1736644b81fc87b7f4edb9017b67bb21cba79fcb198fab79d7742c09fb6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 829afdc1e21b116eeb98fc99131076c4e152fc4bd2bdaacc7ec2f9c0dc7f9563
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "829afdc1e21b116eeb98fc99131076c4e152fc4bd2bdaacc7ec2f9c0dc7f9563", kill_on_drop: false }`
[INFO] [stderr]    Compiling rumi v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 5.28s
[INFO] running `Command { std: "docker" "inspect" "829afdc1e21b116eeb98fc99131076c4e152fc4bd2bdaacc7ec2f9c0dc7f9563", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "829afdc1e21b116eeb98fc99131076c4e152fc4bd2bdaacc7ec2f9c0dc7f9563", kill_on_drop: false }`
[INFO] [stdout] 829afdc1e21b116eeb98fc99131076c4e152fc4bd2bdaacc7ec2f9c0dc7f9563
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] ac97cad943e7af6d0f1facac2d08c912799d3818111391b0a92a367b48203b8b
[INFO] running `Command { std: "docker" "start" "-a" "ac97cad943e7af6d0f1facac2d08c912799d3818111391b0a92a367b48203b8b", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.71s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/rumi_lib-c33ffca6d6f9f4e6
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test test::test_graph_small ... ok
[INFO] [stdout] test test::test_determine_umi ... ok
[INFO] [stdout] test test::test_graph_umi ... ok
[INFO] [stdout] test test::test_group_reads_complex ... ok
[INFO] [stdout] test test::test_read_groups_cigars ... ok
[INFO] [stdout] test test::test_read_groups_umi_tools ... ok
[INFO] [stdout] test test::test_group_reads_small ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/rumi-94484af9093a42f2
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests rumi_lib
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "ac97cad943e7af6d0f1facac2d08c912799d3818111391b0a92a367b48203b8b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ac97cad943e7af6d0f1facac2d08c912799d3818111391b0a92a367b48203b8b", kill_on_drop: false }`
[INFO] [stdout] ac97cad943e7af6d0f1facac2d08c912799d3818111391b0a92a367b48203b8b