[INFO] updating cached repository https://github.com/laeblab/crispy
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }`
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] bd6c9152d0caa2afac5ecdc9d5c70c0a8eb8dd00
[INFO] testing laeblab/crispy against master#8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e for pr-74409
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flaeblab%2Fcrispy" "/workspace/builds/worker-14/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-14/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/laeblab/crispy on toolchain 8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/laeblab/crispy
[INFO] finished tweaking git repo https://github.com/laeblab/crispy
[INFO] tweaked toml for git repo https://github.com/laeblab/crispy written to /workspace/builds/worker-14/source/Cargo.toml
[INFO] crate git repo https://github.com/laeblab/crispy already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] cf8ff11f7f6f39db24193c6b535c42bf99d7c820c4d2929c1b042475042138bf
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "cf8ff11f7f6f39db24193c6b535c42bf99d7c820c4d2929c1b042475042138bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "cf8ff11f7f6f39db24193c6b535c42bf99d7c820c4d2929c1b042475042138bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cf8ff11f7f6f39db24193c6b535c42bf99d7c820c4d2929c1b042475042138bf", kill_on_drop: false }`
[INFO] [stdout] cf8ff11f7f6f39db24193c6b535c42bf99d7c820c4d2929c1b042475042138bf
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9053c2bd7f9faf1d3b66f17fd6bdfdafc7a143171bcebebd545f71b2c70efd06
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "9053c2bd7f9faf1d3b66f17fd6bdfdafc7a143171bcebebd545f71b2c70efd06", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v0.1.6
[INFO] [stderr]    Compiling syn v1.0.5
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling semver-parser v0.7.0
[INFO] [stderr]    Compiling arrayvec v0.4.12
[INFO] [stderr]    Compiling cc v1.0.45
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling unicode-width v0.1.6
[INFO] [stderr]    Compiling ryu v1.0.0
[INFO] [stderr]    Compiling rayon-core v1.6.0
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling bitflags v1.2.0
[INFO] [stderr]    Compiling unicode-segmentation v1.3.0
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling bio v0.28.2
[INFO] [stderr]    Compiling ordermap v0.3.5
[INFO] [stderr]    Compiling fixedbitset v0.1.9
[INFO] [stderr]    Compiling bit-vec v0.5.1
[INFO] [stderr]    Compiling bytecount v0.3.2
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling strum v0.13.0
[INFO] [stderr]    Compiling number_prefix v0.3.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling itertools v0.7.11
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.5
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling bit-set v0.5.1
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling error-chain v0.12.1
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling clicolors-control v1.0.1
[INFO] [stderr]    Compiling num_cpus v1.10.1
[INFO] [stderr]    Compiling termios v0.3.1
[INFO] [stderr]    Compiling atty v0.2.13
[INFO] [stderr]    Compiling regex-automata v0.1.8
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling num-traits v0.2.8
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]    Compiling num-integer v0.1.41
[INFO] [stderr]    Compiling rustc_version v0.2.3
[INFO] [stderr]    Compiling strum_macros v0.13.0
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling backtrace-sys v0.1.31
[INFO] [stderr]    Compiling aho-corasick v0.7.6
[INFO] [stderr]    Compiling csv-core v0.1.6
[INFO] [stderr]    Compiling memoffset v0.5.1
[INFO] [stderr]    Compiling rand v0.3.23
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.7.2
[INFO] [stderr]    Compiling crossbeam-deque v0.7.1
[INFO] [stderr]    Compiling backtrace v0.3.38
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling regex v1.3.1
[INFO] [stderr]    Compiling rayon v1.2.0
[INFO] [stderr]    Compiling console v0.9.0
[INFO] [stderr]    Compiling indicatif v0.12.0
[INFO] [stderr]    Compiling serde_derive v1.0.101
[INFO] [stderr]    Compiling serde v1.0.101
[INFO] [stderr]    Compiling bstr v0.2.8
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling csv v1.1.1
[INFO] [stderr]    Compiling crispyr v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 56s
[INFO] running `Command { std: "docker" "inspect" "9053c2bd7f9faf1d3b66f17fd6bdfdafc7a143171bcebebd545f71b2c70efd06", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9053c2bd7f9faf1d3b66f17fd6bdfdafc7a143171bcebebd545f71b2c70efd06", kill_on_drop: false }`
[INFO] [stdout] 9053c2bd7f9faf1d3b66f17fd6bdfdafc7a143171bcebebd545f71b2c70efd06
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 38afb7adb62685c09bb4b61a302b4d52a9bb2b9dcbe3dfe5c4f23051c1abb365
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "38afb7adb62685c09bb4b61a302b4d52a9bb2b9dcbe3dfe5c4f23051c1abb365", kill_on_drop: false }`
[INFO] [stderr]    Compiling crispyr v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 9.63s
[INFO] running `Command { std: "docker" "inspect" "38afb7adb62685c09bb4b61a302b4d52a9bb2b9dcbe3dfe5c4f23051c1abb365", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "38afb7adb62685c09bb4b61a302b4d52a9bb2b9dcbe3dfe5c4f23051c1abb365", kill_on_drop: false }`
[INFO] [stdout] 38afb7adb62685c09bb4b61a302b4d52a9bb2b9dcbe3dfe5c4f23051c1abb365
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 7be8835db4d18710dfccadbfea27d576adc1e3b309d08c2a4ded0778fcadc082
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "7be8835db4d18710dfccadbfea27d576adc1e3b309d08c2a4ded0778fcadc082", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.22s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/crispyr-ca6d35868462c0cf
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/crispyr-d34b5c74adde2017
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/enzyme-ede9c4114435dcca
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test test_enzyme_mad7 ... ok
[INFO] [stdout] test test_enzyme_cas9 ... ok
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/index-f7ac43b0a73cb7a0
[INFO] [stdout] test test_enzyme_unknown ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 12 tests
[INFO] [stdout] test test_position_to_u64_forward_ref_no_pos ... ok
[INFO] [stdout] test test_position_to_u64_forward_neg_pos_no_ref ... ok
[INFO] [stdout] test test_position_to_u64_reverse_pos_no_ref ... ok
[INFO] [stdout] test test_position_to_u64_reverse_zeroes ... ok
[INFO] [stdout] test test_position_to_u64_forward_neg_pos_and_ref ... ok
[INFO] [stdout] test test_position_to_u64_forward_pos_no_ref ... ok
[INFO] [stdout] test test_position_to_u64_reverse_neg_pos_no_ref ... ok
[INFO] [stdout] test test_position_to_u64_forward_pos_and_ref ... ok
[INFO] [stdout] test test_position_to_u64_forward_zeroes ... ok
[INFO] [stdout] test test_position_to_u64_reverse_ref_no_pos ... ok
[INFO] [stdout] test test_position_to_u64_reverse_pos_and_ref ... ok
[INFO] [stdout] test test_position_to_u64_reverse_neg_pos_and_ref ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/iupac-84ca5cccf133ebca
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/pam-b36d1e592636b417
[INFO] [stdout] test test_basic_nucleotides ... ok
[INFO] [stdout] test test_non_nucleotide_values ... ok
[INFO] [stdout] test test_degenerate_nucleotide ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test test_empty_tail_pam_matches ... ok
[INFO] [stdout] test test_tail_kmer ... ok
[INFO] [stdout] test test_pam_position ... ok
[INFO] [stdout] test test_empty_head_pam_kmer_slice ... ok
[INFO] [stdout] test test_enzyme_kmer_mut_mad7 ... ok
[INFO] [stdout] test test_empty_head_pam_matches ... ok
[INFO] [stdout] test test_enzyme_kmer_mad7 ... ok
[INFO] [stdout] test test_enzyme_kmer_cas9 ... ok
[INFO] [stdout] test test_head_pam_matches ... ok
[INFO] [stdout] test test_tail_pam_matches ... ok
[INFO] [stdout] test test_to_string ... ok
[INFO] [stdout] test test_head_kmer ... ok
[INFO] [stdout] test test_pam_lengths ... ok
[INFO] [stdout] test test_empty_tail_pam_kmer_slice ... ok
[INFO] [stdout] test test_enzyme_kmer_mut_cas9 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests crispyr
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "7be8835db4d18710dfccadbfea27d576adc1e3b309d08c2a4ded0778fcadc082", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7be8835db4d18710dfccadbfea27d576adc1e3b309d08c2a4ded0778fcadc082", kill_on_drop: false }`
[INFO] [stdout] 7be8835db4d18710dfccadbfea27d576adc1e3b309d08c2a4ded0778fcadc082