[INFO] updating cached repository https://github.com/StephanHeijl/global-supertrees [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 60f3ba049bd818be391b122113e956c8fcf55339 [INFO] testing StephanHeijl/global-supertrees against master#8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e for pr-74409 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FStephanHeijl%2Fglobal-supertrees" "/workspace/builds/worker-3/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/StephanHeijl/global-supertrees on toolchain 8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/StephanHeijl/global-supertrees [INFO] finished tweaking git repo https://github.com/StephanHeijl/global-supertrees [INFO] tweaked toml for git repo https://github.com/StephanHeijl/global-supertrees written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate git repo https://github.com/StephanHeijl/global-supertrees already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 483296e63dc5659d25c6b90aa8f79b258f57a19ac84a7cd6724a2427cabd7654 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "483296e63dc5659d25c6b90aa8f79b258f57a19ac84a7cd6724a2427cabd7654", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "483296e63dc5659d25c6b90aa8f79b258f57a19ac84a7cd6724a2427cabd7654", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "483296e63dc5659d25c6b90aa8f79b258f57a19ac84a7cd6724a2427cabd7654", kill_on_drop: false }` [INFO] [stdout] 483296e63dc5659d25c6b90aa8f79b258f57a19ac84a7cd6724a2427cabd7654 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6c5cb2c8021a053ec95e29e6b277407935c75858353fc20c0aea4a5511c8dbb1 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6c5cb2c8021a053ec95e29e6b277407935c75858353fc20c0aea4a5511c8dbb1", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.5 [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling arrayvec v0.4.12 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling half v1.4.0 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling itertools v0.8.0 [INFO] [stderr] Compiling c2-chacha v0.2.2 [INFO] [stderr] Compiling memoffset v0.5.1 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling crossbeam-epoch v0.7.2 [INFO] [stderr] Compiling crossbeam-deque v0.7.1 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling getrandom v0.1.12 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rayon-core v1.6.0 [INFO] [stderr] Compiling rand_chacha v0.2.1 [INFO] [stderr] Compiling rand v0.7.2 [INFO] [stderr] Compiling rayon v1.2.0 [INFO] [stderr] Compiling pyo3-derive-backend v0.8.1 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Compiling proc-macro-hack v0.5.11 [INFO] [stderr] Compiling ghost v0.1.1 [INFO] [stderr] Compiling inventory-impl v0.1.4 [INFO] [stderr] Compiling ctor v0.1.12 [INFO] [stderr] Compiling pyo3cls v0.8.1 [INFO] [stderr] Compiling inventory v0.1.4 [INFO] [stderr] Compiling indoc-impl v0.3.4 [INFO] [stderr] Compiling paste-impl v0.1.6 [INFO] [stderr] Compiling indoc v0.3.4 [INFO] [stderr] Compiling paste v0.1.6 [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Compiling serde_json v1.0.41 [INFO] [stderr] Compiling bincode v1.2.0 [INFO] [stderr] Compiling pyo3 v0.8.1 [INFO] [stderr] Compiling numpy v0.7.0 [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `m` [INFO] [stdout] --> src/lib.rs:31:26 [INFO] [stdout] | [INFO] [stdout] 31 | fn rust_ext(_py: Python, m: &PyModule) -> PyResult<()> { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_m` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `matrix_size` [INFO] [stdout] --> src/graph_tree.rs:465:13 [INFO] [stdout] | [INFO] [stdout] 465 | let mut matrix_size: usize = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_matrix_size` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `leaf` [INFO] [stdout] --> src/graph_tree.rs:470:17 [INFO] [stdout] | [INFO] [stdout] 470 | for leaf in child.leaves.iter() { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `leaf` [INFO] [stdout] --> src/graph_tree.rs:478:17 [INFO] [stdout] | [INFO] [stdout] 478 | for leaf in child.leaves.iter() { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/graph_tree.rs:465:13 [INFO] [stdout] | [INFO] [stdout] 465 | let mut matrix_size: usize = 0; [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/graph_tree.rs:475:13 [INFO] [stdout] | [INFO] [stdout] 475 | let mut connection_matrix: Array2 = Array2::zeros((n_leaves, n_leaves)); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `convert_file_to_dm` [INFO] [stdout] --> src/lib.rs:32:8 [INFO] [stdout] | [INFO] [stdout] 32 | fn convert_file_to_dm(fname : String) -> Array2 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `convert_file_to_distance_matrix_py` [INFO] [stdout] --> src/lib.rs:39:8 [INFO] [stdout] | [INFO] [stdout] 39 | fn convert_file_to_distance_matrix_py(py: Python, fname: String) -> Py> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/bin/bin.rs:1:13 [INFO] [stdout] | [INFO] [stdout] 1 | #[macro_use(s)] [INFO] [stdout] | ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::f32` [INFO] [stdout] --> src/bin/bin.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use std::f32; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::prelude::*` [INFO] [stdout] --> src/bin/bin.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use rand::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/bin/bin.rs:109:13 [INFO] [stdout] | [INFO] [stdout] 109 | out_tree_file.write_all(tree.to_newick().as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 56s [INFO] running `Command { std: "docker" "inspect" "6c5cb2c8021a053ec95e29e6b277407935c75858353fc20c0aea4a5511c8dbb1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6c5cb2c8021a053ec95e29e6b277407935c75858353fc20c0aea4a5511c8dbb1", kill_on_drop: false }` [INFO] [stdout] 6c5cb2c8021a053ec95e29e6b277407935c75858353fc20c0aea4a5511c8dbb1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ab0c0520d15219a3307eb6797d88375170b6836f3228f813a882650b7427d530 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ab0c0520d15219a3307eb6797d88375170b6836f3228f813a882650b7427d530", kill_on_drop: false }` [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `m` [INFO] [stdout] --> src/lib.rs:31:26 [INFO] [stdout] | [INFO] [stdout] 31 | fn rust_ext(_py: Python, m: &PyModule) -> PyResult<()> { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_m` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `matrix_size` [INFO] [stdout] --> src/graph_tree.rs:465:13 [INFO] [stdout] | [INFO] [stdout] 465 | let mut matrix_size: usize = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_matrix_size` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `leaf` [INFO] [stdout] --> src/graph_tree.rs:470:17 [INFO] [stdout] | [INFO] [stdout] 470 | for leaf in child.leaves.iter() { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `leaf` [INFO] [stdout] --> src/graph_tree.rs:478:17 [INFO] [stdout] | [INFO] [stdout] 478 | for leaf in child.leaves.iter() { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/graph_tree.rs:465:13 [INFO] [stdout] | [INFO] [stdout] 465 | let mut matrix_size: usize = 0; [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/graph_tree.rs:475:13 [INFO] [stdout] | [INFO] [stdout] 475 | let mut connection_matrix: Array2 = Array2::zeros((n_leaves, n_leaves)); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `convert_file_to_dm` [INFO] [stdout] --> src/lib.rs:32:8 [INFO] [stdout] | [INFO] [stdout] 32 | fn convert_file_to_dm(fname : String) -> Array2 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `convert_file_to_distance_matrix_py` [INFO] [stdout] --> src/lib.rs:39:8 [INFO] [stdout] | [INFO] [stdout] 39 | fn convert_file_to_distance_matrix_py(py: Python, fname: String) -> Py> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> src/bin/bin.rs:1:13 [INFO] [stdout] | [INFO] [stdout] 1 | #[macro_use(s)] [INFO] [stdout] | ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::f32` [INFO] [stdout] --> src/bin/bin.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use std::f32; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::prelude::*` [INFO] [stdout] --> src/bin/bin.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use rand::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/bin/bin.rs:109:13 [INFO] [stdout] | [INFO] [stdout] 109 | out_tree_file.write_all(tree.to_newick().as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `m` [INFO] [stdout] --> src/lib.rs:31:26 [INFO] [stdout] | [INFO] [stdout] 31 | fn rust_ext(_py: Python, m: &PyModule) -> PyResult<()> { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_m` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `mapping` is never read [INFO] [stdout] --> src/tests.rs:262:13 [INFO] [stdout] | [INFO] [stdout] 262 | let mut mapping : BTreeMap<[u8; 10], u32> = BTreeMap::new(); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `matrix_size` [INFO] [stdout] --> src/graph_tree.rs:465:13 [INFO] [stdout] | [INFO] [stdout] 465 | let mut matrix_size: usize = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_matrix_size` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `leaf` [INFO] [stdout] --> src/graph_tree.rs:470:17 [INFO] [stdout] | [INFO] [stdout] 470 | for leaf in child.leaves.iter() { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `leaf` [INFO] [stdout] --> src/graph_tree.rs:478:17 [INFO] [stdout] | [INFO] [stdout] 478 | for leaf in child.leaves.iter() { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/graph_tree.rs:465:13 [INFO] [stdout] | [INFO] [stdout] 465 | let mut matrix_size: usize = 0; [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/graph_tree.rs:475:13 [INFO] [stdout] | [INFO] [stdout] 475 | let mut connection_matrix: Array2 = Array2::zeros((n_leaves, n_leaves)); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `convert_file_to_dm` [INFO] [stdout] --> src/lib.rs:32:8 [INFO] [stdout] | [INFO] [stdout] 32 | fn convert_file_to_dm(fname : String) -> Array2 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `convert_file_to_distance_matrix_py` [INFO] [stdout] --> src/lib.rs:39:8 [INFO] [stdout] | [INFO] [stdout] 39 | fn convert_file_to_distance_matrix_py(py: Python, fname: String) -> Py> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 10.37s [INFO] running `Command { std: "docker" "inspect" "ab0c0520d15219a3307eb6797d88375170b6836f3228f813a882650b7427d530", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ab0c0520d15219a3307eb6797d88375170b6836f3228f813a882650b7427d530", kill_on_drop: false }` [INFO] [stdout] ab0c0520d15219a3307eb6797d88375170b6836f3228f813a882650b7427d530 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:38e1b949b06cde1964af550a6e548bd9b2b2ea170003ae122f8fc0886596cc07" "/opt/rustwide/cargo-home/bin/cargo" "+8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] b4121fb26d7c8ee9c9b5403d58fefab85ea3a08009d16c5d75849dd74d569a51 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b4121fb26d7c8ee9c9b5403d58fefab85ea3a08009d16c5d75849dd74d569a51", kill_on_drop: false }` [INFO] [stderr] warning: unused variable: `m` [INFO] [stderr] --> src/lib.rs:31:26 [INFO] [stderr] | [INFO] [stderr] 31 | fn rust_ext(_py: Python, m: &PyModule) -> PyResult<()> { [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_m` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `matrix_size` [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_matrix_size` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:470:17 [INFO] [stderr] | [INFO] [stderr] 470 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:478:17 [INFO] [stderr] | [INFO] [stderr] 478 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:475:13 [INFO] [stderr] | [INFO] [stderr] 475 | let mut connection_matrix: Array2 = Array2::zeros((n_leaves, n_leaves)); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_dm` [INFO] [stderr] --> src/lib.rs:32:8 [INFO] [stderr] | [INFO] [stderr] 32 | fn convert_file_to_dm(fname : String) -> Array2 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_distance_matrix_py` [INFO] [stderr] --> src/lib.rs:39:8 [INFO] [stderr] | [INFO] [stderr] 39 | fn convert_file_to_distance_matrix_py(py: Python, fname: String) -> Py> { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: 8 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unused variable: `m` [INFO] [stderr] --> src/lib.rs:31:26 [INFO] [stderr] | [INFO] [stderr] 31 | fn rust_ext(_py: Python, m: &PyModule) -> PyResult<()> { [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_m` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: value assigned to `mapping` is never read [INFO] [stderr] --> src/tests.rs:262:13 [INFO] [stderr] | [INFO] [stderr] 262 | let mut mapping : BTreeMap<[u8; 10], u32> = BTreeMap::new(); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_assignments)]` on by default [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] [INFO] [stderr] warning: unused variable: `matrix_size` [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_matrix_size` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:470:17 [INFO] [stderr] | [INFO] [stderr] 470 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `leaf` [INFO] [stderr] --> src/graph_tree.rs:478:17 [INFO] [stderr] | [INFO] [stderr] 478 | for leaf in child.leaves.iter() { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_leaf` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:465:13 [INFO] [stderr] | [INFO] [stderr] 465 | let mut matrix_size: usize = 0; [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/graph_tree.rs:475:13 [INFO] [stderr] | [INFO] [stderr] 475 | let mut connection_matrix: Array2 = Array2::zeros((n_leaves, n_leaves)); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_dm` [INFO] [stderr] --> src/lib.rs:32:8 [INFO] [stderr] | [INFO] [stderr] 32 | fn convert_file_to_dm(fname : String) -> Array2 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `convert_file_to_distance_matrix_py` [INFO] [stderr] --> src/lib.rs:39:8 [INFO] [stderr] | [INFO] [stderr] 39 | fn convert_file_to_distance_matrix_py(py: Python, fname: String) -> Py> { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: 9 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unused `#[macro_use]` import [INFO] [stderr] --> src/bin/bin.rs:1:13 [INFO] [stderr] | [INFO] [stderr] 1 | #[macro_use(s)] [INFO] [stderr] | ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::f32` [INFO] [stderr] --> src/bin/bin.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use std::f32; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `rand::prelude::*` [INFO] [stderr] --> src/bin/bin.rs:15:5 [INFO] [stderr] | [INFO] [stderr] 15 | use rand::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/bin/bin.rs:109:13 [INFO] [stderr] | [INFO] [stderr] 109 | out_tree_file.write_all(tree.to_newick().as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: 4 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.21s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/global_supertrees-784d359a1163ef45 [INFO] [stdout] [INFO] [stdout] running 18 tests [INFO] [stdout] test tests::tests::test_find_first_zero ... ok [INFO] [stdout] test tests::tests::test_get_levels_from_root ... ok [INFO] [stdout] test tests::tests::test_find_first_common_ancestor ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_1 ... ok [INFO] [stdout] test tests::tests::test_load_tree_file ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_3 ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_2 ... ok [INFO] [stdout] test tests::tests::test_to_newick ... ok [INFO] [stdout] test tests::tests::test_to_dot ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_simple ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium_nested ... ok [INFO] [stdout] test tests::tests::test_get_partial_tree ... ok [INFO] [stdout] Started neighbour joining [INFO] [stdout] Started neighbour joining [INFO] [stdout] Finished neighbour joining. [INFO] [stdout] Finished neighbour joining. [INFO] [stdout] test tests::tests::test_merge_organisms ... FAILED [INFO] [stdout] test tests::tests::test_batch_id_tax_mapping ... FAILED [INFO] [stdout] test tests::tests::test_merge_trees ... FAILED [INFO] [stdout] test tests::tests::test_neighbour_joining ... ok [INFO] [stdout] ==(1)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(1)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(3)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(3)== [INFO] [stdout] ==(1)== [INFO] [stdout] ==(1)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(3)== [INFO] [stdout] ==(1)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(1)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(3)== [INFO] [stdout] ==(1)== [INFO] [stdout] ==(2)== [INFO] [stdout] ==(3)== [INFO] [stdout] Unmatched leaves: {""} [INFO] [stdout] Unmatched leaves: {""} [INFO] [stdout] Unmatched leaves: {""} [INFO] [stdout] Unmatched leaves: {""} [INFO] [stdout] Unmatched leaves: {""} [INFO] [stdout] test tests::tests::test_tree_merging ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_merge_organisms stdout ---- [INFO] [stdout] thread 'tests::tests::test_merge_organisms' panicked at 'index out of bounds: the len is 2 but the index is 2', src/uniprot.rs:51:26 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x563d23f87525 - backtrace::backtrace::libunwind::trace::hea89dfbbfe67f40d [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x563d23f87525 - backtrace::backtrace::trace_unsynchronized::h0513dd713d7644d4 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x563d23f87525 - std::sys_common::backtrace::_print_fmt::h040abae64e4a24a9 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x563d23f87525 - ::fmt::hb4bdb37c3c335733 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x563d23fb155c - core::fmt::write::h540ac4a6a1232abc [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x563d23ce5735 - std::io::Write::write_fmt::h4be0daababb55bba [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/io/mod.rs:1539 [INFO] [stdout] 6: 0x563d23f81ab1 - std::io::impls::>::write_fmt::h83c1e1aa73f374f5 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x563d23f89c90 - std::sys_common::backtrace::_print::hb55cc635eaf1882e [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x563d23f89c90 - std::sys_common::backtrace::print::h2b2218fa55714084 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x563d23f89c90 - std::panicking::default_hook::{{closure}}::h578517c025765cf3 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x563d23f8998a - std::panicking::default_hook::h4cafc94c2fc640fb [INFO] [stdout] at src/libstd/panicking.rs:214 [INFO] [stdout] 11: 0x563d23f8a2d3 - std::panicking::rust_panic_with_hook::h3eeb5001beeca5c3 [INFO] [stdout] at src/libstd/panicking.rs:526 [INFO] [stdout] 12: 0x563d23f89ecb - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:437 [INFO] [stdout] 13: 0x563d23faf1e1 - core::panicking::panic_fmt::h78830ea6a34e7206 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 14: 0x563d23faf1a2 - core::panicking::panic_bounds_check::hdef4fff11e167a6a [INFO] [stdout] at src/libcore/panicking.rs:62 [INFO] [stdout] 15: 0x563d23f53552 - >::index::h7f8f4fe3cb0991cb [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/slice/mod.rs:3109 [INFO] [stdout] 16: 0x563d23f53303 - core::slice:: for [T]>::index::he19ff0f62b73a292 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/slice/mod.rs:2959 [INFO] [stdout] 17: 0x563d23f54f55 - as core::ops::index::Index>::index::h3247f4643ba5403f [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/vec.rs:1975 [INFO] [stdout] 18: 0x563d23bad740 - global_supertrees::uniprot::load_mapping_file::h921e1300506938c1 [INFO] [stdout] at src/uniprot.rs:51 [INFO] [stdout] 19: 0x563d23c2dde8 - global_supertrees::tests::tests::test_merge_organisms::h2556c06448df77a5 [INFO] [stdout] at src/tests.rs:245 [INFO] [stdout] 20: 0x563d23c2dd8a - global_supertrees::tests::tests::test_merge_organisms::{{closure}}::hc4bdfb279973cac2 [INFO] [stdout] at src/tests.rs:244 [INFO] [stdout] 21: 0x563d23bca38e - core::ops::function::FnOnce::call_once::h9d8a63b2da19ec2e [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/ops/function.rs:233 [INFO] [stdout] 22: 0x563d23d0ccac - as core::ops::function::FnOnce>::call_once::h8340ba6798e0c4ff [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 23: 0x563d23d0ccac - as core::ops::function::FnOnce<()>>::call_once::h5590e98676605094 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:318 [INFO] [stdout] 24: 0x563d23d0ccac - std::panicking::try::do_call::hd8680a2dbb0ed3c4 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:348 [INFO] [stdout] 25: 0x563d23d0ccac - std::panicking::try::h46b4de2d705e7a8d [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:325 [INFO] [stdout] 26: 0x563d23d0ccac - std::panic::catch_unwind::h059b3f06991e0a9c [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:394 [INFO] [stdout] 27: 0x563d23d0ccac - test::run_test_in_process::h5ae08a65430494a4 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 28: 0x563d23d0ccac - test::run_test::run_test_inner::{{closure}}::h4b36073838376ae8 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 29: 0x563d23ce4c26 - std::sys_common::backtrace::__rust_begin_short_backtrace::h0169d0be588b8bf0 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 30: 0x563d23ce9c15 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h71bfc37e887d3973 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/thread/mod.rs:475 [INFO] [stdout] 31: 0x563d23ce9c15 - as core::ops::function::FnOnce<()>>::call_once::h36c65072907dc180 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:318 [INFO] [stdout] 32: 0x563d23ce9c15 - std::panicking::try::do_call::h4e0f426e17cd216c [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:348 [INFO] [stdout] 33: 0x563d23ce9c15 - std::panicking::try::hd05e4ef6b4303d29 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:325 [INFO] [stdout] 34: 0x563d23ce9c15 - std::panic::catch_unwind::h19a1127ec729c5dd [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:394 [INFO] [stdout] 35: 0x563d23ce9c15 - std::thread::Builder::spawn_unchecked::{{closure}}::h011300735f06b1e2 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/thread/mod.rs:474 [INFO] [stdout] 36: 0x563d23ce9c15 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h1e3c55f31f1d122e [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/ops/function.rs:233 [INFO] [stdout] 37: 0x563d23f905aa - as core::ops::function::FnOnce>::call_once::hc0e15d78a519721e [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 38: 0x563d23f905aa - as core::ops::function::FnOnce>::call_once::h211da8fffb09f192 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 39: 0x563d23f905aa - std::sys::unix::thread::Thread::new::thread_start::h29594ddebf23e421 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 40: 0x7f2f5f95b609 - start_thread [INFO] [stdout] 41: 0x7f2f5f867103 - __clone [INFO] [stdout] 42: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_batch_id_tax_mapping stdout ---- [INFO] [stdout] thread 'tests::tests::test_batch_id_tax_mapping' panicked at 'index out of bounds: the len is 2 but the index is 2', src/uniprot.rs:51:26 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x563d23f87525 - backtrace::backtrace::libunwind::trace::hea89dfbbfe67f40d [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x563d23f87525 - backtrace::backtrace::trace_unsynchronized::h0513dd713d7644d4 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x563d23f87525 - std::sys_common::backtrace::_print_fmt::h040abae64e4a24a9 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x563d23f87525 - ::fmt::hb4bdb37c3c335733 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x563d23fb155c - core::fmt::write::h540ac4a6a1232abc [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x563d23ce5735 - std::io::Write::write_fmt::h4be0daababb55bba [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/io/mod.rs:1539 [INFO] [stdout] 6: 0x563d23f81ab1 - std::io::impls::>::write_fmt::h83c1e1aa73f374f5 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x563d23f89c90 - std::sys_common::backtrace::_print::hb55cc635eaf1882e [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x563d23f89c90 - std::sys_common::backtrace::print::h2b2218fa55714084 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x563d23f89c90 - std::panicking::default_hook::{{closure}}::h578517c025765cf3 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x563d23f8998a - std::panicking::default_hook::h4cafc94c2fc640fb [INFO] [stdout] at src/libstd/panicking.rs:214 [INFO] [stdout] 11: 0x563d23f8a2d3 - std::panicking::rust_panic_with_hook::h3eeb5001beeca5c3 [INFO] [stdout] at src/libstd/panicking.rs:526 [INFO] [stdout] 12: 0x563d23f89ecb - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:437 [INFO] [stdout] 13: 0x563d23faf1e1 - core::panicking::panic_fmt::h78830ea6a34e7206 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 14: 0x563d23faf1a2 - core::panicking::panic_bounds_check::hdef4fff11e167a6a [INFO] [stdout] at src/libcore/panicking.rs:62 [INFO] [stdout] 15: 0x563d23f53552 - >::index::h7f8f4fe3cb0991cb [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/slice/mod.rs:3109 [INFO] [stdout] 16: 0x563d23f53303 - core::slice:: for [T]>::index::he19ff0f62b73a292 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/slice/mod.rs:2959 [INFO] [stdout] 17: 0x563d23f54f55 - as core::ops::index::Index>::index::h3247f4643ba5403f [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/vec.rs:1975 [INFO] [stdout] 18: 0x563d23bad740 - global_supertrees::uniprot::load_mapping_file::h921e1300506938c1 [INFO] [stdout] at src/uniprot.rs:51 [INFO] [stdout] 19: 0x563d23c2db55 - global_supertrees::tests::tests::test_batch_id_tax_mapping::haf6b42e0e7899460 [INFO] [stdout] at src/tests.rs:239 [INFO] [stdout] 20: 0x563d23c2da0a - global_supertrees::tests::tests::test_batch_id_tax_mapping::{{closure}}::h1afaf9e4a1180c04 [INFO] [stdout] at src/tests.rs:236 [INFO] [stdout] 21: 0x563d23bca29e - core::ops::function::FnOnce::call_once::h68063789d25f20b2 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/ops/function.rs:233 [INFO] [stdout] 22: 0x563d23d0ccac - as core::ops::function::FnOnce>::call_once::h8340ba6798e0c4ff [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 23: 0x563d23d0ccac - as core::ops::function::FnOnce<()>>::call_once::h5590e98676605094 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:318 [INFO] [stdout] 24: 0x563d23d0ccac - std::panicking::try::do_call::hd8680a2dbb0ed3c4 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:348 [INFO] [stdout] 25: 0x563d23d0ccac - std::panicking::try::h46b4de2d705e7a8d [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:325 [INFO] [stdout] 26: 0x563d23d0ccac - std::panic::catch_unwind::h059b3f06991e0a9c [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:394 [INFO] [stdout] 27: 0x563d23d0ccac - test::run_test_in_process::h5ae08a65430494a4 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 28: 0x563d23d0ccac - test::run_test::run_test_inner::{{closure}}::h4b36073838376ae8 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 29: 0x563d23ce4c26 - std::sys_common::backtrace::__rust_begin_short_backtrace::h0169d0be588b8bf0 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 30: 0x563d23ce9c15 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h71bfc37e887d3973 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/thread/mod.rs:475 [INFO] [stdout] 31: 0x563d23ce9c15 - as core::ops::function::FnOnce<()>>::call_once::h36c65072907dc180 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:318 [INFO] [stdout] 32: 0x563d23ce9c15 - std::panicking::try::do_call::h4e0f426e17cd216c [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:348 [INFO] [stdout] 33: 0x563d23ce9c15 - std::panicking::try::hd05e4ef6b4303d29 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:325 [INFO] [stdout] 34: 0x563d23ce9c15 - std::panic::catch_unwind::h19a1127ec729c5dd [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:394 [INFO] [stdout] 35: 0x563d23ce9c15 - std::thread::Builder::spawn_unchecked::{{closure}}::h011300735f06b1e2 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/thread/mod.rs:474 [INFO] [stdout] 36: 0x563d23ce9c15 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h1e3c55f31f1d122e [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/ops/function.rs:233 [INFO] [stdout] 37: 0x563d23f905aa - as core::ops::function::FnOnce>::call_once::hc0e15d78a519721e [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 38: 0x563d23f905aa - as core::ops::function::FnOnce>::call_once::h211da8fffb09f192 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 39: 0x563d23f905aa - std::sys::unix::thread::Thread::new::thread_start::h29594ddebf23e421 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 40: 0x7f2f5f95b609 - start_thread [INFO] [stdout] 41: 0x7f2f5f867103 - __clone [INFO] [stdout] 42: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_merge_trees stdout ---- [INFO] [stdout] thread 'tests::tests::test_merge_trees' panicked at 'index out of bounds: the len is 2 but the index is 2', src/uniprot.rs:51:26 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x563d23f87525 - backtrace::backtrace::libunwind::trace::hea89dfbbfe67f40d [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stdout] 1: 0x563d23f87525 - backtrace::backtrace::trace_unsynchronized::h0513dd713d7644d4 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x563d23f87525 - std::sys_common::backtrace::_print_fmt::h040abae64e4a24a9 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stdout] 3: 0x563d23f87525 - ::fmt::hb4bdb37c3c335733 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stdout] 4: 0x563d23fb155c - core::fmt::write::h540ac4a6a1232abc [INFO] [stdout] at src/libcore/fmt/mod.rs:1076 [INFO] [stdout] 5: 0x563d23ce5735 - std::io::Write::write_fmt::h4be0daababb55bba [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/io/mod.rs:1539 [INFO] [stdout] 6: 0x563d23f81ab1 - std::io::impls::>::write_fmt::h83c1e1aa73f374f5 [INFO] [stdout] at src/libstd/io/impls.rs:176 [INFO] [stdout] 7: 0x563d23f89c90 - std::sys_common::backtrace::_print::hb55cc635eaf1882e [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stdout] 8: 0x563d23f89c90 - std::sys_common::backtrace::print::h2b2218fa55714084 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stdout] 9: 0x563d23f89c90 - std::panicking::default_hook::{{closure}}::h578517c025765cf3 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 10: 0x563d23f8998a - std::panicking::default_hook::h4cafc94c2fc640fb [INFO] [stdout] at src/libstd/panicking.rs:214 [INFO] [stdout] 11: 0x563d23f8a2d3 - std::panicking::rust_panic_with_hook::h3eeb5001beeca5c3 [INFO] [stdout] at src/libstd/panicking.rs:526 [INFO] [stdout] 12: 0x563d23f89ecb - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:437 [INFO] [stdout] 13: 0x563d23faf1e1 - core::panicking::panic_fmt::h78830ea6a34e7206 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 14: 0x563d23faf1a2 - core::panicking::panic_bounds_check::hdef4fff11e167a6a [INFO] [stdout] at src/libcore/panicking.rs:62 [INFO] [stdout] 15: 0x563d23f53552 - >::index::h7f8f4fe3cb0991cb [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/slice/mod.rs:3109 [INFO] [stdout] 16: 0x563d23f53303 - core::slice:: for [T]>::index::he19ff0f62b73a292 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/slice/mod.rs:2959 [INFO] [stdout] 17: 0x563d23f54f55 - as core::ops::index::Index>::index::h3247f4643ba5403f [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/vec.rs:1975 [INFO] [stdout] 18: 0x563d23bad740 - global_supertrees::uniprot::load_mapping_file::h921e1300506938c1 [INFO] [stdout] at src/uniprot.rs:51 [INFO] [stdout] 19: 0x563d23c2e3f3 - global_supertrees::tests::tests::test_merge_trees::h7ce9d1e12fc3f8a3 [INFO] [stdout] at src/tests.rs:271 [INFO] [stdout] 20: 0x563d23c2e2ea - global_supertrees::tests::tests::test_merge_trees::{{closure}}::hd2d7969258a3eafc [INFO] [stdout] at src/tests.rs:261 [INFO] [stdout] 21: 0x563d23bca32e - core::ops::function::FnOnce::call_once::h82791a76e855120e [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/ops/function.rs:233 [INFO] [stdout] 22: 0x563d23d0ccac - as core::ops::function::FnOnce>::call_once::h8340ba6798e0c4ff [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 23: 0x563d23d0ccac - as core::ops::function::FnOnce<()>>::call_once::h5590e98676605094 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:318 [INFO] [stdout] 24: 0x563d23d0ccac - std::panicking::try::do_call::hd8680a2dbb0ed3c4 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:348 [INFO] [stdout] 25: 0x563d23d0ccac - std::panicking::try::h46b4de2d705e7a8d [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:325 [INFO] [stdout] 26: 0x563d23d0ccac - std::panic::catch_unwind::h059b3f06991e0a9c [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:394 [INFO] [stdout] 27: 0x563d23d0ccac - test::run_test_in_process::h5ae08a65430494a4 [INFO] [stdout] at src/libtest/lib.rs:541 [INFO] [stdout] 28: 0x563d23d0ccac - test::run_test::run_test_inner::{{closure}}::h4b36073838376ae8 [INFO] [stdout] at src/libtest/lib.rs:450 [INFO] [stdout] 29: 0x563d23ce4c26 - std::sys_common::backtrace::__rust_begin_short_backtrace::h0169d0be588b8bf0 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/sys_common/backtrace.rs:130 [INFO] [stdout] 30: 0x563d23ce9c15 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h71bfc37e887d3973 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/thread/mod.rs:475 [INFO] [stdout] 31: 0x563d23ce9c15 - as core::ops::function::FnOnce<()>>::call_once::h36c65072907dc180 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:318 [INFO] [stdout] 32: 0x563d23ce9c15 - std::panicking::try::do_call::h4e0f426e17cd216c [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:348 [INFO] [stdout] 33: 0x563d23ce9c15 - std::panicking::try::hd05e4ef6b4303d29 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panicking.rs:325 [INFO] [stdout] 34: 0x563d23ce9c15 - std::panic::catch_unwind::h19a1127ec729c5dd [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/panic.rs:394 [INFO] [stdout] 35: 0x563d23ce9c15 - std::thread::Builder::spawn_unchecked::{{closure}}::h011300735f06b1e2 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libstd/thread/mod.rs:474 [INFO] [stdout] 36: 0x563d23ce9c15 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h1e3c55f31f1d122e [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/libcore/ops/function.rs:233 [INFO] [stdout] 37: 0x563d23f905aa - as core::ops::function::FnOnce>::call_once::hc0e15d78a519721e [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 38: 0x563d23f905aa - as core::ops::function::FnOnce>::call_once::h211da8fffb09f192 [INFO] [stdout] at /rustc/8534be72fc3b9c5f2f2dc4e4ee7b651a008e9a3e/src/liballoc/boxed.rs:1081 [INFO] [stdout] 39: 0x563d23f905aa - std::sys::unix::thread::Thread::new::thread_start::h29594ddebf23e421 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:87 [INFO] [stdout] 40: 0x7f2f5f95b609 - start_thread [INFO] [stdout] 41: 0x7f2f5f867103 - __clone [INFO] [stdout] 42: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::tests::test_batch_id_tax_mapping [INFO] [stdout] tests::tests::test_merge_organisms [INFO] [stdout] tests::tests::test_merge_trees [INFO] [stdout] [INFO] [stdout] test result: FAILED. 15 passed; 3 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `Command { std: "docker" "inspect" "b4121fb26d7c8ee9c9b5403d58fefab85ea3a08009d16c5d75849dd74d569a51", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b4121fb26d7c8ee9c9b5403d58fefab85ea3a08009d16c5d75849dd74d569a51", kill_on_drop: false }` [INFO] [stdout] b4121fb26d7c8ee9c9b5403d58fefab85ea3a08009d16c5d75849dd74d569a51