[INFO] crate varlociraptor 1.7.2 is already in cache [INFO] checking varlociraptor-1.7.2 against master#e1beee4992ad4b235fc700bf7af1ee86f894ea53 for pr-74130 [INFO] extracting crate varlociraptor 1.7.2 into /workspace/builds/worker-12/source [INFO] validating manifest of crates.io crate varlociraptor 1.7.2 on toolchain e1beee4992ad4b235fc700bf7af1ee86f894ea53 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+e1beee4992ad4b235fc700bf7af1ee86f894ea53" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate varlociraptor 1.7.2 [INFO] finished tweaking crates.io crate varlociraptor 1.7.2 [INFO] tweaked toml for crates.io crate varlociraptor 1.7.2 written to /workspace/builds/worker-12/source/Cargo.toml [INFO] crate crates.io crate varlociraptor 1.7.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+e1beee4992ad4b235fc700bf7af1ee86f894ea53" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:819119df93c0f5eca3f29186f14981ef29945a311854d7222af07488600a2584" "/opt/rustwide/cargo-home/bin/cargo" "+e1beee4992ad4b235fc700bf7af1ee86f894ea53" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 6abeb52e502fe7a2b87b7759a0e06ec2114e63e29a9a1bc063d94eff1f3b2347 [INFO] running `Command { std: "docker" "start" "-a" "6abeb52e502fe7a2b87b7759a0e06ec2114e63e29a9a1bc063d94eff1f3b2347", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6abeb52e502fe7a2b87b7759a0e06ec2114e63e29a9a1bc063d94eff1f3b2347", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6abeb52e502fe7a2b87b7759a0e06ec2114e63e29a9a1bc063d94eff1f3b2347", kill_on_drop: false }` [INFO] [stdout] 6abeb52e502fe7a2b87b7759a0e06ec2114e63e29a9a1bc063d94eff1f3b2347 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:819119df93c0f5eca3f29186f14981ef29945a311854d7222af07488600a2584" "/opt/rustwide/cargo-home/bin/cargo" "+e1beee4992ad4b235fc700bf7af1ee86f894ea53" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e3440329c316d2a6afee97a0267e8e45b2000131d1ed32ba41658cf1700d53a3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e3440329c316d2a6afee97a0267e8e45b2000131d1ed32ba41658cf1700d53a3", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling winapi-build v0.1.1 [INFO] [stderr] Compiling bindgen v0.53.2 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling lazycell v1.2.1 [INFO] [stderr] Compiling unicode-segmentation v1.6.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Checking winapi v0.2.8 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Compiling ucd-trie v0.1.3 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling askama_escape v0.2.0 [INFO] [stderr] Compiling humansize v1.1.0 [INFO] [stderr] Checking ppv-lite86 v0.2.6 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Checking ordermap v0.3.5 [INFO] [stderr] Checking fixedbitset v0.1.9 [INFO] [stderr] Checking linked-hash-map v0.5.2 [INFO] [stderr] Compiling anyhow v1.0.27 [INFO] [stderr] Compiling bio v0.31.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking regex-syntax v0.3.9 [INFO] [stderr] Checking utf8-ranges v0.1.3 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking bytecount v0.6.0 [INFO] [stderr] Checking c_vec v1.0.12 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking fnv v1.0.6 [INFO] [stderr] Checking dtoa v0.4.5 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Compiling memoffset v0.5.4 [INFO] [stderr] Compiling bzip2-sys v0.1.8+1.0.8 [INFO] [stderr] Compiling backtrace-sys v0.1.34 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling miniz-sys v0.1.12 [INFO] [stderr] Compiling nom v5.1.1 [INFO] [stderr] Compiling openssl-sys v0.9.54 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling curl-sys v0.4.30+curl-7.69.1 [INFO] [stderr] Compiling lzma-sys v0.1.15 [INFO] [stderr] Compiling GSL v1.1.0 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling clang-sys v0.29.2 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking lock_api v0.1.5 [INFO] [stderr] Compiling bv v0.11.0 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling pest v2.1.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling kernel32-sys v0.2.2 [INFO] [stderr] Checking yaml-rust v0.4.3 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Checking petgraph v0.4.13 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking idna v0.2.0 [INFO] [stderr] Checking idna v0.1.5 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking num_cpus v1.12.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking memchr v0.1.11 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Checking aho-corasick v0.7.10 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking crossbeam-queue v0.2.1 [INFO] [stderr] Compiling pest_meta v2.1.3 [INFO] [stderr] Checking url v1.7.2 [INFO] [stderr] Checking aho-corasick v0.5.3 [INFO] [stderr] Checking rand v0.6.5 [INFO] [stderr] Checking url v2.1.1 [INFO] [stderr] Checking crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Checking flate2 v0.2.20 [INFO] [stderr] Checking thread-id v2.0.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.3.23 [INFO] [stderr] Checking backtrace v0.3.45 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking ordered-float v1.0.2 [INFO] [stderr] Checking counter v0.4.3 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Checking regex v1.3.5 [INFO] [stderr] Checking thread_local v0.2.7 [INFO] [stderr] Checking hyper v0.10.16 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking parking_lot_core v0.4.0 [INFO] [stderr] Checking statrs v0.11.0 [INFO] [stderr] Checking chrono v0.4.11 [INFO] [stderr] Checking rayon-core v1.7.0 [INFO] [stderr] Checking regex v0.1.80 [INFO] [stderr] Checking num v0.1.42 [INFO] [stderr] Checking parking_lot v0.7.1 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Checking rulinalg v0.3.7 [INFO] [stderr] Checking chrono v0.2.25 [INFO] [stderr] Checking tempfile v3.1.0 [INFO] [stderr] Checking once_cell v0.1.8 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking fern v0.5.9 [INFO] [stderr] Checking cached v0.9.0 [INFO] [stderr] Checking env_logger v0.3.5 [INFO] [stderr] Checking ftp v3.0.1 [INFO] [stderr] Checking rusty-machine v0.5.4 [INFO] [stderr] Compiling snafu-derive v0.5.0 [INFO] [stderr] Compiling syn-mid v0.5.0 [INFO] [stderr] Compiling darling_core v0.10.2 [INFO] [stderr] Compiling pest_generator v2.1.3 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling snafu-derive v0.6.2 [INFO] [stderr] Compiling proc-macro-error-attr v0.4.11 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling thiserror-impl v1.0.11 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling pest_derive v2.1.0 [INFO] [stderr] Compiling getset v0.0.8 [INFO] [stderr] Compiling shrinkwraprs v0.2.3 [INFO] [stderr] Checking snafu v0.5.0 [INFO] [stderr] Compiling proc-macro-error v0.4.11 [INFO] [stderr] Compiling structopt-derive v0.4.4 [INFO] [stderr] Compiling darling_macro v0.10.2 [INFO] [stderr] Checking thiserror v1.0.11 [INFO] [stderr] Compiling hts-sys v1.10.2 [INFO] [stderr] Checking snafu v0.6.0 [INFO] [stderr] Compiling darling v0.10.2 [INFO] [stderr] Compiling derive_builder_core v0.9.0 [INFO] [stderr] Compiling derive_builder v0.9.0 [INFO] [stderr] Checking serde v1.0.104 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking bstr v0.2.12 [INFO] [stderr] Checking toml v0.4.10 [INFO] [stderr] Checking bio-types v0.5.1 [INFO] [stderr] Checking serde_json v1.0.48 [INFO] [stderr] Checking multimap v0.6.0 [INFO] [stderr] Checking half v1.5.0 [INFO] [stderr] Checking serde_yaml v0.8.11 [INFO] [stderr] Checking bincode v1.2.1 [INFO] [stderr] Checking clap v2.33.0 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking eval v0.4.3 [INFO] [stderr] Checking askama_shared v0.8.0 [INFO] [stderr] Compiling askama_derive v0.8.0 [INFO] [stderr] Checking structopt v0.3.11 [INFO] [stderr] Checking rust-htslib v0.27.0 [INFO] [stderr] Checking askama v0.8.0 [INFO] [stderr] Checking varlociraptor v1.7.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `crate::utils::enum_variants` [INFO] [stdout] --> src/cli.rs:35:5 [INFO] [stdout] | [INFO] [stdout] 35 | use crate::utils::enum_variants; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:189:31 [INFO] [stdout] | [INFO] [stdout] 189 | possible_values = { &ProtocolStrandedness::iter().map(|v| v.into()).collect_vec() }, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_braces)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:254:31 [INFO] [stdout] | [INFO] [stdout] 254 | possible_values = { &estimation::tumor_mutational_burden::PlotMode::iter().map(|v| v.into()).collect_vec() }, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:399:31 [INFO] [stdout] | [INFO] [stdout] 399 | possible_values = { &VariantType::iter().map(|v| v.into()).collect_vec() }, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:422:31 [INFO] [stdout] | [INFO] [stdout] 422 | possible_values = {&KassRaftery::iter().map(|v| v.into()).collect_vec()}, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::utils::enum_variants` [INFO] [stdout] --> src/cli.rs:35:5 [INFO] [stdout] | [INFO] [stdout] 35 | use crate::utils::enum_variants; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:189:31 [INFO] [stdout] | [INFO] [stdout] 189 | possible_values = { &ProtocolStrandedness::iter().map(|v| v.into()).collect_vec() }, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_braces)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:254:31 [INFO] [stdout] | [INFO] [stdout] 254 | possible_values = { &estimation::tumor_mutational_burden::PlotMode::iter().map(|v| v.into()).collect_vec() }, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:399:31 [INFO] [stdout] | [INFO] [stdout] 399 | possible_values = { &VariantType::iter().map(|v| v.into()).collect_vec() }, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:422:31 [INFO] [stdout] | [INFO] [stdout] 422 | possible_values = {&KassRaftery::iter().map(|v| v.into()).collect_vec()}, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3m 48s [INFO] running `Command { std: "docker" "inspect" "e3440329c316d2a6afee97a0267e8e45b2000131d1ed32ba41658cf1700d53a3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e3440329c316d2a6afee97a0267e8e45b2000131d1ed32ba41658cf1700d53a3", kill_on_drop: false }` [INFO] [stdout] e3440329c316d2a6afee97a0267e8e45b2000131d1ed32ba41658cf1700d53a3