[INFO] updating cached repository https://github.com/stjude/fqlib [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune", kill_on_drop: false }` [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] d46ed4238fd5c5b240223d2e48c75eb486066e89 [INFO] documenting stjude/fqlib against try#66dfc4e010913fbed0c4ea91fc2c010004b0f441 for pr-73566 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib" "/workspace/builds/worker-11/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-11/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/stjude/fqlib on toolchain 66dfc4e010913fbed0c4ea91fc2c010004b0f441 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+66dfc4e010913fbed0c4ea91fc2c010004b0f441" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/stjude/fqlib [INFO] finished tweaking git repo https://github.com/stjude/fqlib [INFO] tweaked toml for git repo https://github.com/stjude/fqlib written to /workspace/builds/worker-11/source/Cargo.toml [INFO] crate git repo https://github.com/stjude/fqlib already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+66dfc4e010913fbed0c4ea91fc2c010004b0f441" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:819119df93c0f5eca3f29186f14981ef29945a311854d7222af07488600a2584" "/opt/rustwide/cargo-home/bin/cargo" "+66dfc4e010913fbed0c4ea91fc2c010004b0f441" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 04135d4e411957a457aef2222f10bb017d4b21a2e238cdf5912fdce5f12a28cc [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "04135d4e411957a457aef2222f10bb017d4b21a2e238cdf5912fdce5f12a28cc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "04135d4e411957a457aef2222f10bb017d4b21a2e238cdf5912fdce5f12a28cc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "04135d4e411957a457aef2222f10bb017d4b21a2e238cdf5912fdce5f12a28cc", kill_on_drop: false }` [INFO] [stdout] 04135d4e411957a457aef2222f10bb017d4b21a2e238cdf5912fdce5f12a28cc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:819119df93c0f5eca3f29186f14981ef29945a311854d7222af07488600a2584" "/opt/rustwide/cargo-home/bin/cargo" "+66dfc4e010913fbed0c4ea91fc2c010004b0f441" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 4034156f3c20b024ee2e3be4164fe93f71326ed603a413ca771a639b95a3cdc6 [INFO] running `Command { std: "docker" "start" "-a" "4034156f3c20b024ee2e3be4164fe93f71326ed603a413ca771a639b95a3cdc6", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling syn v1.0.33 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking adler v0.2.2 [INFO] [stderr] Compiling anyhow v1.0.31 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking noodles-fastq v0.1.0 (https://github.com/zaeleus/noodles.git?rev=df7f99536b74d1e3be4c7d47587402f0fe0043d0#df7f9953) [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Checking memchr v2.3.3 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking bbloom v0.1.0 (https://github.com/zaeleus/bbloom.git?tag=v0.1.0#2c9f6163) [INFO] [stderr] Compiling log v0.4.8 [INFO] [stderr] Checking miniz_oxide v0.4.0 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking aho-corasick v0.7.13 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Checking clap v2.33.1 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking flate2 v1.0.16 [INFO] [stderr] Compiling time v0.1.43 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking regex v1.3.9 [INFO] [stderr] Compiling chrono v0.4.11 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Checking rand_distr v0.2.2 [INFO] [stderr] Compiling git-testament-derive v0.1.10 [INFO] [stderr] Checking git-testament v0.1.9 [INFO] [stderr] Checking fqlib v0.4.0 (/opt/rustwide/workdir) [INFO] [stderr] Documenting fqlib v0.4.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: `[P001]` cannot be resolved, ignoring it. [INFO] [stdout] --> src/validators/paired/names.rs:5:6 [INFO] [stdout] | [INFO] [stdout] 5 | /// [P001] (medium) Validator to check if each paired read name is the same, excluding interleave. [INFO] [stdout] | ^^^^ cannot be resolved, ignoring [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(intra_doc_link_resolution_failure)]` on by default [INFO] [stdout] = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `[P001]` cannot be resolved, ignoring it. [INFO] [stdout] --> src/validators/paired/names.rs:5:6 [INFO] [stdout] | [INFO] [stdout] 5 | /// [P001] (medium) Validator to check if each paired read name is the same, excluding interleave. [INFO] [stdout] | ^^^^ cannot be resolved, ignoring [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `[S002]` cannot be resolved, ignoring it. [INFO] [stdout] --> src/validators/single/alphabet.rs:7:6 [INFO] [stdout] | [INFO] [stdout] 7 | /// [S002] (medium) Validator to check if all the characters in the sequence line are included in a [INFO] [stdout] | ^^^^ cannot be resolved, ignoring [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `[S004]` cannot be resolved, ignoring it. [INFO] [stdout] --> src/validators/single/complete.rs:5:6 [INFO] [stdout] | [INFO] [stdout] 5 | /// [S004] (low) Validator to check if all four record lines (name, sequence, plus line, and [INFO] [stdout] | ^^^^ cannot be resolved, ignoring [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `[S005]` cannot be resolved, ignoring it. [INFO] [stdout] --> src/validators/single/consistent_seq_qual.rs:5:6 [INFO] [stdout] | [INFO] [stdout] 5 | /// [S005] (high) Validator to check if the sequence and quality lengths are the same. [INFO] [stdout] | ^^^^ cannot be resolved, ignoring [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `[S007]` cannot be resolved, ignoring it. [INFO] [stdout] --> src/validators/single/duplicate_name.rs:11:6 [INFO] [stdout] | [INFO] [stdout] 11 | /// [S007] (high) Validator to check if all record names are unique. [INFO] [stdout] | ^^^^ cannot be resolved, ignoring [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `[S003]` cannot be resolved, ignoring it. [INFO] [stdout] --> src/validators/single/name.rs:5:6 [INFO] [stdout] | [INFO] [stdout] 5 | /// [S003] (high) Validator to check if the name line starts with an "@". [INFO] [stdout] | ^^^^ cannot be resolved, ignoring [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `[S001]` cannot be resolved, ignoring it. [INFO] [stdout] --> src/validators/single/plus_line.rs:5:6 [INFO] [stdout] | [INFO] [stdout] 5 | /// [S001] (low) Validator to check if the plus line starts with a "+". [INFO] [stdout] | ^^^^ cannot be resolved, ignoring [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `[S006]` cannot be resolved, ignoring it. [INFO] [stdout] --> src/validators/single/quality_string.rs:5:6 [INFO] [stdout] | [INFO] [stdout] 5 | /// [S006] (medium) Validator to check if all the characters in the quality line are between "!" and [INFO] [stdout] | ^^^^ cannot be resolved, ignoring [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 9 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 35.63s [INFO] running `Command { std: "docker" "inspect" "4034156f3c20b024ee2e3be4164fe93f71326ed603a413ca771a639b95a3cdc6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4034156f3c20b024ee2e3be4164fe93f71326ed603a413ca771a639b95a3cdc6", kill_on_drop: false }` [INFO] [stdout] 4034156f3c20b024ee2e3be4164fe93f71326ed603a413ca771a639b95a3cdc6