[INFO] crate hdf5-rs 0.2.0 is already in cache [INFO] documenting hdf5-rs-0.2.0 against master#394e1b40d264aa6928811919c1124fa248e7d802 for pr-73566 [INFO] extracting crate hdf5-rs 0.2.0 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate hdf5-rs 0.2.0 on toolchain 394e1b40d264aa6928811919c1124fa248e7d802 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+394e1b40d264aa6928811919c1124fa248e7d802" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5-rs 0.2.0 [INFO] removed path dependency libhdf5-lib from crates.io crate hdf5-rs 0.2.0 [INFO] removed path dependency libhdf5-sys from crates.io crate hdf5-rs 0.2.0 [INFO] removed path dependency remutex from crates.io crate hdf5-rs 0.2.0 [INFO] removed path dependency libhdf5-lib from crates.io crate hdf5-rs 0.2.0 [INFO] finished tweaking crates.io crate hdf5-rs 0.2.0 [INFO] tweaked toml for crates.io crate hdf5-rs 0.2.0 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+394e1b40d264aa6928811919c1124fa248e7d802" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+394e1b40d264aa6928811919c1124fa248e7d802" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:819119df93c0f5eca3f29186f14981ef29945a311854d7222af07488600a2584" "/opt/rustwide/cargo-home/bin/cargo" "+394e1b40d264aa6928811919c1124fa248e7d802" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 97ef1f7fcfca260fc84deba2e22f1ae7d774eaa990cad3a06a9d3399663b3228 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "97ef1f7fcfca260fc84deba2e22f1ae7d774eaa990cad3a06a9d3399663b3228", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "97ef1f7fcfca260fc84deba2e22f1ae7d774eaa990cad3a06a9d3399663b3228", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "97ef1f7fcfca260fc84deba2e22f1ae7d774eaa990cad3a06a9d3399663b3228", kill_on_drop: false }` [INFO] [stdout] 97ef1f7fcfca260fc84deba2e22f1ae7d774eaa990cad3a06a9d3399663b3228 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:819119df93c0f5eca3f29186f14981ef29945a311854d7222af07488600a2584" "/opt/rustwide/cargo-home/bin/cargo" "+394e1b40d264aa6928811919c1124fa248e7d802" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b0b217c13a867ddbfea199876ac427bb21e2d27edae9e41b17aa979b13d017a7 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b0b217c13a867ddbfea199876ac427bb21e2d27edae9e41b17aa979b13d017a7", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling num-iter v0.1.41 [INFO] [stderr] Compiling libhdf5-lib v0.2.0 [INFO] [stderr] Checking remutex v0.1.1 [INFO] [stderr] Compiling libhdf5-sys v0.2.0 [INFO] [stderr] Compiling hdf5-rs v0.2.0 (/opt/rustwide/workdir) [INFO] [stdout] error: linking with `cc` failed: exit code: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-L" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/hdf5-rs-e4cbea5845a913a0/build_script_build-e4cbea5845a913a0.build_script_build.20nuqxn4-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-e4cbea5845a913a0/build_script_build-e4cbea5845a913a0.build_script_build.20nuqxn4-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-e4cbea5845a913a0/build_script_build-e4cbea5845a913a0.build_script_build.20nuqxn4-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-e4cbea5845a913a0/build_script_build-e4cbea5845a913a0.build_script_build.20nuqxn4-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-e4cbea5845a913a0/build_script_build-e4cbea5845a913a0.build_script_build.20nuqxn4-cgu.4.rcgu.o" "-o" "/opt/rustwide/target/debug/build/hdf5-rs-e4cbea5845a913a0/build_script_build-e4cbea5845a913a0" "/opt/rustwide/target/debug/build/hdf5-rs-e4cbea5845a913a0/build_script_build-e4cbea5845a913a0.1pay81kfiavkg4fu.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-495ae5a0c0b0070c.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-b6aff3703feff874.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-812457dcc335cb0e.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-d3b70323dc13665e.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-a72ca64738319f23.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace-ae466ecb818a21c7.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace_sys-8965f725fa371d94.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-f5d385bbcf1c0598.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-14d182d411047066.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-45730ad7fe9247a8.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-95ea48ddc44a311b.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-077a7bdb239ba92c.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-68f423c59dc48a40.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-54580c7798bf2225.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-31151f98ccdb185a.rlib" "-Wl,-Bdynamic" "-lhdf5" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-ldl" "-lutil" [INFO] [stdout] = note: /usr/bin/ld: cannot find -lhdf5 [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: linking with `cc` failed: exit code: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-L" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/libhdf5-sys-54f38f5390476173/build_script_build-54f38f5390476173.build_script_build.4vkvfv7n-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-54f38f5390476173/build_script_build-54f38f5390476173.build_script_build.4vkvfv7n-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-54f38f5390476173/build_script_build-54f38f5390476173.build_script_build.4vkvfv7n-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-54f38f5390476173/build_script_build-54f38f5390476173.build_script_build.4vkvfv7n-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-54f38f5390476173/build_script_build-54f38f5390476173.build_script_build.4vkvfv7n-cgu.4.rcgu.o" "-o" "/opt/rustwide/target/debug/build/libhdf5-sys-54f38f5390476173/build_script_build-54f38f5390476173" "/opt/rustwide/target/debug/build/libhdf5-sys-54f38f5390476173/build_script_build-54f38f5390476173.3p9ohyrabeswggkb.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-495ae5a0c0b0070c.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-b6aff3703feff874.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-812457dcc335cb0e.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-d3b70323dc13665e.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-a72ca64738319f23.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace-ae466ecb818a21c7.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace_sys-8965f725fa371d94.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-f5d385bbcf1c0598.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-14d182d411047066.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-45730ad7fe9247a8.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-95ea48ddc44a311b.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-077a7bdb239ba92c.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-68f423c59dc48a40.rlib" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-54580c7798bf2225.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/394e1b40d264aa6928811919c1124fa248e7d802/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-31151f98ccdb185a.rlib" "-Wl,-Bdynamic" "-lhdf5" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-ldl" "-lutil" [INFO] [stdout] = note: /usr/bin/ld: cannot find -lhdf5 [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `libhdf5-sys`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "b0b217c13a867ddbfea199876ac427bb21e2d27edae9e41b17aa979b13d017a7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b0b217c13a867ddbfea199876ac427bb21e2d27edae9e41b17aa979b13d017a7", kill_on_drop: false }` [INFO] [stdout] b0b217c13a867ddbfea199876ac427bb21e2d27edae9e41b17aa979b13d017a7