[INFO] crate varlociraptor 1.7.2 is already in cache [INFO] checking varlociraptor-1.7.2 against try#c8bdaa84ec1b37f18f30375e196a65b7602f3790 for pr-73345 [INFO] extracting crate varlociraptor 1.7.2 into /workspace/builds/worker-13/source [INFO] validating manifest of crates.io crate varlociraptor 1.7.2 on toolchain c8bdaa84ec1b37f18f30375e196a65b7602f3790 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate varlociraptor 1.7.2 [INFO] finished tweaking crates.io crate varlociraptor 1.7.2 [INFO] tweaked toml for crates.io crate varlociraptor 1.7.2 written to /workspace/builds/worker-13/source/Cargo.toml [INFO] crate crates.io crate varlociraptor 1.7.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:6c9ffe128752d56c8d75334ed354142a5229917ed99767f56566dd8e857ad726" "/opt/rustwide/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 5a037ece919d06e8a6657fb34847ad5fcf0b0a13b8b6c4fd540daa2ddffca4d2 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5a037ece919d06e8a6657fb34847ad5fcf0b0a13b8b6c4fd540daa2ddffca4d2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5a037ece919d06e8a6657fb34847ad5fcf0b0a13b8b6c4fd540daa2ddffca4d2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5a037ece919d06e8a6657fb34847ad5fcf0b0a13b8b6c4fd540daa2ddffca4d2", kill_on_drop: false }` [INFO] [stdout] 5a037ece919d06e8a6657fb34847ad5fcf0b0a13b8b6c4fd540daa2ddffca4d2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:6c9ffe128752d56c8d75334ed354142a5229917ed99767f56566dd8e857ad726" "/opt/rustwide/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2059e8cc95054722a908e9a4d6f9b24aa6028e5279ad3dc6d909b3a475e5c0f3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "2059e8cc95054722a908e9a4d6f9b24aa6028e5279ad3dc6d909b3a475e5c0f3", kill_on_drop: false }` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling cc v1.0.50 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling version_check v0.9.1 [INFO] [stderr] Checking rand_core v0.4.2 [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling ryu v1.0.3 [INFO] [stderr] Compiling bindgen v0.53.2 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling winapi-build v0.1.1 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling lazycell v1.2.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Checking winapi v0.2.8 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking itoa v0.4.5 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ucd-trie v0.1.3 [INFO] [stderr] Checking unicode-width v0.1.7 [INFO] [stderr] Compiling maplit v1.0.2 [INFO] [stderr] Compiling rayon-core v1.7.0 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Compiling humansize v1.1.0 [INFO] [stderr] Compiling askama_escape v0.2.0 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Checking fixedbitset v0.1.9 [INFO] [stderr] Compiling bio v0.31.0 [INFO] [stderr] Compiling anyhow v1.0.27 [INFO] [stderr] Checking bit-vec v0.5.1 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking linked-hash-map v0.5.2 [INFO] [stderr] Checking ordermap v0.3.5 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking c_vec v1.0.12 [INFO] [stderr] Checking bytecount v0.6.0 [INFO] [stderr] Checking utf8-ranges v0.1.3 [INFO] [stderr] Checking remove_dir_all v0.5.2 [INFO] [stderr] Checking dtoa v0.4.5 [INFO] [stderr] Checking fnv v1.0.6 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking regex-syntax v0.3.9 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Compiling GSL v1.1.0 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking rand_core v0.3.1 [INFO] [stderr] Checking rand_jitter v0.1.4 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking lock_api v0.1.5 [INFO] [stderr] Compiling kernel32-sys v0.2.2 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Compiling pest v2.1.3 [INFO] [stderr] Compiling bv v0.11.0 [INFO] [stderr] Checking yaml-rust v0.4.3 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Checking bit-set v0.5.1 [INFO] [stderr] Compiling nom v5.1.1 [INFO] [stderr] Compiling proc-macro-error-attr v0.4.11 [INFO] [stderr] Compiling proc-macro-error v0.4.11 [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Checking idna v0.2.0 [INFO] [stderr] Checking idna v0.1.5 [INFO] [stderr] Checking rand_hc v0.1.0 [INFO] [stderr] Checking rand_isaac v0.1.1 [INFO] [stderr] Checking rand_xorshift v0.1.1 [INFO] [stderr] Compiling clang-sys v0.29.2 [INFO] [stderr] Checking petgraph v0.4.13 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking time v0.1.42 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking num_cpus v1.12.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking memchr v0.1.11 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Compiling parking_lot_core v0.4.0 [INFO] [stderr] Checking url v2.1.1 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Checking url v1.7.2 [INFO] [stderr] Compiling pest_meta v2.1.3 [INFO] [stderr] Checking crossbeam-queue v0.2.1 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking aho-corasick v0.5.3 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling openssl-sys v0.9.54 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling lzma-sys v0.1.15 [INFO] [stderr] Compiling bzip2-sys v0.1.8+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.30+curl-7.69.1 [INFO] [stderr] Compiling backtrace-sys v0.1.34 [INFO] [stderr] Compiling miniz-sys v0.1.12 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Checking thread-id v2.0.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Compiling regex v1.3.5 [INFO] [stderr] Checking hyper v0.10.16 [INFO] [stderr] Checking ordered-float v1.0.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking counter v0.4.3 [INFO] [stderr] Checking thread_local v0.2.7 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking regex v0.1.80 [INFO] [stderr] Checking chrono v0.4.11 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking num v0.1.42 [INFO] [stderr] Checking flate2 v0.2.20 [INFO] [stderr] Checking rulinalg v0.3.7 [INFO] [stderr] Checking chrono v0.2.25 [INFO] [stderr] Checking fern v0.5.9 [INFO] [stderr] Checking statrs v0.11.0 [INFO] [stderr] Checking backtrace v0.3.45 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Checking tempfile v3.1.0 [INFO] [stderr] Checking env_logger v0.3.5 [INFO] [stderr] Checking parking_lot v0.7.1 [INFO] [stderr] Checking once_cell v0.1.8 [INFO] [stderr] Checking cached v0.9.0 [INFO] [stderr] Checking ftp v3.0.1 [INFO] [stderr] Checking rusty-machine v0.5.4 [INFO] [stderr] Compiling snafu-derive v0.5.0 [INFO] [stderr] Compiling darling_core v0.10.2 [INFO] [stderr] Compiling syn-mid v0.5.0 [INFO] [stderr] Compiling pest_generator v2.1.3 [INFO] [stderr] Checking snafu v0.5.0 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling snafu-derive v0.6.2 [INFO] [stderr] Compiling thiserror-impl v1.0.11 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling pest_derive v2.1.0 [INFO] [stderr] Compiling getset v0.0.8 [INFO] [stderr] Compiling shrinkwraprs v0.2.3 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling hts-sys v1.10.2 [INFO] [stderr] Compiling darling_macro v0.10.2 [INFO] [stderr] Compiling structopt-derive v0.4.4 [INFO] [stderr] Checking thiserror v1.0.11 [INFO] [stderr] Compiling darling v0.10.2 [INFO] [stderr] Compiling derive_builder_core v0.9.0 [INFO] [stderr] Checking snafu v0.6.0 [INFO] [stderr] Compiling derive_builder v0.9.0 [INFO] [stderr] Checking serde v1.0.104 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking bio-types v0.5.1 [INFO] [stderr] Checking bstr v0.2.12 [INFO] [stderr] Checking toml v0.4.10 [INFO] [stderr] Checking serde_json v1.0.48 [INFO] [stderr] Checking multimap v0.6.0 [INFO] [stderr] Checking bincode v1.2.1 [INFO] [stderr] Checking serde_yaml v0.8.11 [INFO] [stderr] Checking half v1.5.0 [INFO] [stderr] Checking clap v2.33.0 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking askama_shared v0.8.0 [INFO] [stderr] Checking eval v0.4.3 [INFO] [stderr] Compiling askama_derive v0.8.0 [INFO] [stderr] Checking structopt v0.3.11 [INFO] [stderr] Checking rust-htslib v0.27.0 [INFO] [stderr] Checking askama v0.8.0 [INFO] [stderr] Checking varlociraptor v1.7.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `crate::utils::enum_variants` [INFO] [stdout] --> src/cli.rs:35:5 [INFO] [stdout] | [INFO] [stdout] 35 | use crate::utils::enum_variants; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:189:31 [INFO] [stdout] | [INFO] [stdout] 189 | possible_values = { &ProtocolStrandedness::iter().map(|v| v.into()).collect_vec() }, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_braces)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:254:31 [INFO] [stdout] | [INFO] [stdout] 254 | possible_values = { &estimation::tumor_mutational_burden::PlotMode::iter().map(|v| v.into()).collect_vec() }, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:399:31 [INFO] [stdout] | [INFO] [stdout] 399 | possible_values = { &VariantType::iter().map(|v| v.into()).collect_vec() }, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:422:31 [INFO] [stdout] | [INFO] [stdout] 422 | possible_values = {&KassRaftery::iter().map(|v| v.into()).collect_vec()}, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::utils::enum_variants` [INFO] [stdout] --> src/cli.rs:35:5 [INFO] [stdout] | [INFO] [stdout] 35 | use crate::utils::enum_variants; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:189:31 [INFO] [stdout] | [INFO] [stdout] 189 | possible_values = { &ProtocolStrandedness::iter().map(|v| v.into()).collect_vec() }, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_braces)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:254:31 [INFO] [stdout] | [INFO] [stdout] 254 | possible_values = { &estimation::tumor_mutational_burden::PlotMode::iter().map(|v| v.into()).collect_vec() }, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:399:31 [INFO] [stdout] | [INFO] [stdout] 399 | possible_values = { &VariantType::iter().map(|v| v.into()).collect_vec() }, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around method argument [INFO] [stdout] --> src/cli.rs:422:31 [INFO] [stdout] | [INFO] [stdout] 422 | possible_values = {&KassRaftery::iter().map(|v| v.into()).collect_vec()}, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 4m 10s [INFO] running `Command { std: "docker" "inspect" "2059e8cc95054722a908e9a4d6f9b24aa6028e5279ad3dc6d909b3a475e5c0f3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2059e8cc95054722a908e9a4d6f9b24aa6028e5279ad3dc6d909b3a475e5c0f3", kill_on_drop: false }` [INFO] [stdout] 2059e8cc95054722a908e9a4d6f9b24aa6028e5279ad3dc6d909b3a475e5c0f3