[INFO] fetching crate neuro 0.1.0... [INFO] checking neuro-0.1.0 against try#c8bdaa84ec1b37f18f30375e196a65b7602f3790 for pr-73345 [INFO] extracting crate neuro 0.1.0 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate neuro 0.1.0 on toolchain c8bdaa84ec1b37f18f30375e196a65b7602f3790 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate neuro 0.1.0 [INFO] finished tweaking crates.io crate neuro 0.1.0 [INFO] tweaked toml for crates.io crate neuro 0.1.0 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate crates.io crate neuro 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded hdf5-types v0.6.0 [INFO] [stderr] Downloaded hdf5-sys v0.6.0 [INFO] [stderr] Downloaded hdf5-derive v0.6.0 [INFO] [stderr] Downloaded hdf5 v0.6.0 [INFO] [stderr] Downloaded arrayfire v3.6.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:6c9ffe128752d56c8d75334ed354142a5229917ed99767f56566dd8e857ad726" "/opt/rustwide/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] fe9ab99f3d008a90e9733eaca071f21d0eb40ad3199383d72f0ff646b0e8f462 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "fe9ab99f3d008a90e9733eaca071f21d0eb40ad3199383d72f0ff646b0e8f462", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fe9ab99f3d008a90e9733eaca071f21d0eb40ad3199383d72f0ff646b0e8f462", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fe9ab99f3d008a90e9733eaca071f21d0eb40ad3199383d72f0ff646b0e8f462", kill_on_drop: false }` [INFO] [stdout] fe9ab99f3d008a90e9733eaca071f21d0eb40ad3199383d72f0ff646b0e8f462 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:6c9ffe128752d56c8d75334ed354142a5229917ed99767f56566dd8e857ad726" "/opt/rustwide/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 21a5449b7252202ba22085c9151a8b01003e06e518bd70845f72816fcac36294 [INFO] running `Command { std: "docker" "start" "-a" "21a5449b7252202ba22085c9151a8b01003e06e518bd70845f72816fcac36294", kill_on_drop: false }` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling cc v1.0.50 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.14 [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Checking ppv-lite86 v0.2.6 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Checking ascii v0.9.3 [INFO] [stderr] Checking unicode-width v0.1.7 [INFO] [stderr] Checking number_prefix v0.3.0 [INFO] [stderr] Checking bytemuck v1.2.0 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-bigint v0.2.6 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Compiling num-rational v0.2.3 [INFO] [stderr] Checking rand_jitter v0.1.4 [INFO] [stderr] Checking lock_api v0.2.0 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking inflate v0.4.5 [INFO] [stderr] Checking miniz_oxide v0.3.6 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Checking rand_hc v0.1.0 [INFO] [stderr] Checking rand_isaac v0.1.1 [INFO] [stderr] Checking rand_xorshift v0.1.1 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Checking crc32fast v1.2.0 [INFO] [stderr] Checking c2-chacha v0.2.3 [INFO] [stderr] Checking aho-corasick v0.7.9 [INFO] [stderr] Checking regex-automata v0.1.8 [INFO] [stderr] Checking deflate v0.7.20 [INFO] [stderr] Compiling memoffset v0.5.3 [INFO] [stderr] Compiling parking_lot_core v0.5.0 [INFO] [stderr] Compiling parking_lot v0.8.0 [INFO] [stderr] Checking tiff v0.4.0 [INFO] [stderr] Checking num_cpus v1.12.0 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking clicolors-control v1.0.1 [INFO] [stderr] Checking termios v0.3.1 [INFO] [stderr] Checking hdf5-types v0.6.0 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Checking png v0.15.3 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Checking crossbeam-queue v0.2.1 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking regex v1.3.4 [INFO] [stderr] Checking rand_chacha v0.2.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking rayon-core v1.7.0 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking console v0.9.2 [INFO] [stderr] Checking indicatif v0.14.0 [INFO] [stderr] Checking num v0.2.1 [INFO] [stderr] Checking jpeg-decoder v0.1.18 [INFO] [stderr] Compiling hdf5-sys v0.6.0 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling serde_json v1.0.48 [INFO] [stderr] Checking image v0.23.0 [INFO] [stderr] Compiling hdf5-derive v0.6.0 [INFO] [stderr] Checking bstr v0.2.11 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-57fe4c1d69ac2da2/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55affa67c6f5 - backtrace::backtrace::libunwind::trace::hc3f32ba24d88242a [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55affa67c6f5 - backtrace::backtrace::trace_unsynchronized::haad2590418eb4c26 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55affa67c6f5 - std::sys_common::backtrace::_print_fmt::h4397782fec59f199 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55affa67c6f5 - ::fmt::h39652f0242246c81 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55affa6a025c - core::fmt::write::h540ac4a6a1232abc [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x55affa679473 - std::io::Write::write_fmt::haa03b5883ee9e297 [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x55affa67ece0 - std::sys_common::backtrace::_print::ha6d9bdf9f438acec [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55affa67ece0 - std::sys_common::backtrace::print::ha1fba17a8e5f6bc7 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55affa67ece0 - std::panicking::default_hook::{{closure}}::ha3c41e6964bb5c0e [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55affa67ea2c - std::panicking::default_hook::h39b8550780094336 [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x55affa67f317 - std::panicking::rust_panic_with_hook::hc8b48ce48004c103 [INFO] [stderr] at src/libstd/panicking.rs:477 [INFO] [stderr] 11: 0x55affa497f89 - std::panicking::begin_panic::he69067ce0e7ae914 [INFO] [stderr] at /rustc/c8bdaa84ec1b37f18f30375e196a65b7602f3790/src/libstd/panicking.rs:404 [INFO] [stderr] 12: 0x55affa45b58c - build_script_build::LibrarySearcher::try_locate_hdf5_library::h75092e8dd2648a74 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527 [INFO] [stderr] 13: 0x55affa45c93c - build_script_build::main::hd1437c6bd5199cac [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:605 [INFO] [stderr] 14: 0x55affa46659b - std::rt::lang_start::{{closure}}::h153fc0282f523325 [INFO] [stderr] at /rustc/c8bdaa84ec1b37f18f30375e196a65b7602f3790/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x55affa67f6e8 - std::rt::lang_start_internal::{{closure}}::h980666b660b57c6b [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x55affa67f6e8 - std::panicking::try::do_call::h350bf2b82f81cf24 [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 17: 0x55affa67f6e8 - std::panicking::try::hcafd728f614c0cb2 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 18: 0x55affa67f6e8 - std::panic::catch_unwind::h301dc6a83a38a171 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x55affa67f6e8 - std::rt::lang_start_internal::hf4abd869024c3270 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x55affa466577 - std::rt::lang_start::h6196a88c6682ec99 [INFO] [stderr] at /rustc/c8bdaa84ec1b37f18f30375e196a65b7602f3790/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x55affa45d46a - main [INFO] [stderr] 22: 0x7f8841e270b3 - __libc_start_main [INFO] [stderr] 23: 0x55affa4571ae - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "21a5449b7252202ba22085c9151a8b01003e06e518bd70845f72816fcac36294", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "21a5449b7252202ba22085c9151a8b01003e06e518bd70845f72816fcac36294", kill_on_drop: false }` [INFO] [stdout] 21a5449b7252202ba22085c9151a8b01003e06e518bd70845f72816fcac36294