[INFO] fetching crate gchemol 0.0.41...
[INFO] checking gchemol-0.0.41 against try#c8bdaa84ec1b37f18f30375e196a65b7602f3790 for pr-73345
[INFO] extracting crate gchemol 0.0.41 into /workspace/builds/worker-9/source
[INFO] validating manifest of crates.io crate gchemol 0.0.41 on toolchain c8bdaa84ec1b37f18f30375e196a65b7602f3790
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol 0.0.41
[INFO] finished tweaking crates.io crate gchemol 0.0.41
[INFO] tweaked toml for crates.io crate gchemol 0.0.41 written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded gchemol-readwrite v0.0.41
[INFO] [stderr]   Downloaded gchemol-geometry v0.0.39
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:6c9ffe128752d56c8d75334ed354142a5229917ed99767f56566dd8e857ad726" "/opt/rustwide/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 015e269b3dd9a341cfba27f9ca704d28fe00aea7020ab275f24b86e99a9de92b
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "015e269b3dd9a341cfba27f9ca704d28fe00aea7020ab275f24b86e99a9de92b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "015e269b3dd9a341cfba27f9ca704d28fe00aea7020ab275f24b86e99a9de92b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "015e269b3dd9a341cfba27f9ca704d28fe00aea7020ab275f24b86e99a9de92b", kill_on_drop: false }`
[INFO] [stdout] 015e269b3dd9a341cfba27f9ca704d28fe00aea7020ab275f24b86e99a9de92b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:6c9ffe128752d56c8d75334ed354142a5229917ed99767f56566dd8e857ad726" "/opt/rustwide/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1ccd64c083b0c52cac91fb7680bc78e10d1abd16f58daf5b1c6fae6d93e28772
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "1ccd64c083b0c52cac91fb7680bc78e10d1abd16f58daf5b1c6fae6d93e28772", kill_on_drop: false }`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling proc-macro2 v1.0.18
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling libc v0.2.71
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling serde v1.0.112
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling log v0.4.8
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]    Compiling typenum v1.12.0
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]     Checking either v1.5.3
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling serde_json v1.0.55
[INFO] [stderr]     Checking fnv v1.0.7
[INFO] [stderr]    Compiling lexical-core v0.7.4
[INFO] [stderr]     Checking arrayvec v0.5.1
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]     Checking deunicode v0.4.3
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[INFO] [stderr]     Checking humansize v1.1.0
[INFO] [stderr]     Checking remove_dir_all v0.5.3
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]     Checking humantime v1.3.0
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking memchr v2.3.3
[INFO] [stderr]     Checking slug v0.1.4
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.2
[INFO] [stderr]    Compiling proc-macro-error v1.0.2
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]     Checking aho-corasick v0.7.10
[INFO] [stderr]     Checking bstr v0.2.13
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling num-integer v0.1.43
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[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
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[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking getrandom v0.1.14
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking time v0.1.43
[INFO] [stderr]     Checking clap v2.33.1
[INFO] [stderr]    Compiling syn v1.0.31
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]     Checking crossbeam-queue v0.2.3
[INFO] [stderr]    Compiling chrono-tz v0.5.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking generic-array v0.13.2
[INFO] [stderr]     Checking crossbeam-deque v0.7.3
[INFO] [stderr]     Checking rayon-core v1.7.0
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[INFO] [stderr]     Checking chrono v0.4.11
[INFO] [stderr]     Checking rayon v1.3.0
[INFO] [stderr]     Checking env_logger v0.7.1
[INFO] [stderr]     Checking globset v0.4.5
[INFO] [stderr]     Checking rand_distr v0.2.2
[INFO] [stderr]     Checking tempfile v3.1.0
[INFO] [stderr]     Checking pretty_env_logger v0.4.0
[INFO] [stderr]     Checking ignore v0.4.16
[INFO] [stderr]     Checking globwalk v0.8.0
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr]    Compiling pest_generator v2.1.3
[INFO] [stderr]    Compiling serde_derive v1.0.112
[INFO] [stderr]    Compiling pest_derive v2.1.0
[INFO] [stderr]    Compiling structopt-derive v0.4.7
[INFO] [stderr]     Checking structopt v0.3.14
[INFO] [stderr]     Checking toml v0.5.6
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking envy v0.4.1
[INFO] [stderr]     Checking bimap v0.4.0
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]     Checking handlebars v3.1.0
[INFO] [stderr]     Checking tera v1.3.1
[INFO] [stderr]     Checking gchemol-gut v0.1.3
[INFO] [stderr]     Checking gchemol-graph v0.1.1
[INFO] [stderr]     Checking gchemol-parser v0.2.1
[INFO] [stderr]     Checking nalgebra v0.20.0
[INFO] [stderr]     Checking vecfx v0.1.2
[INFO] [stderr]     Checking octree v0.1.0
[INFO] [stderr]     Checking gchemol-lattice v0.1.0
[INFO] [stderr]     Checking gchemol-geometry v0.0.39
[INFO] [stderr]     Checking gchemol-neighbors v0.1.0
[INFO] [stderr]     Checking gchemol-core v0.0.42
[INFO] [stderr]     Checking gchemol-readwrite v0.0.41
[INFO] [stderr]     Checking gchemol v0.0.41 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `gchemol::prelude::*`
[INFO] [stdout]  --> tests/molecule.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use gchemol::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `mol`
[INFO] [stdout]   --> tests/io.rs:44:9
[INFO] [stdout]    |
[INFO] [stdout] 44 |     for mol in gchemol::io::read(&f).expect("read mol2") {
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_mol`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 24s
[INFO] running `Command { std: "docker" "inspect" "1ccd64c083b0c52cac91fb7680bc78e10d1abd16f58daf5b1c6fae6d93e28772", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1ccd64c083b0c52cac91fb7680bc78e10d1abd16f58daf5b1c6fae6d93e28772", kill_on_drop: false }`
[INFO] [stdout] 1ccd64c083b0c52cac91fb7680bc78e10d1abd16f58daf5b1c6fae6d93e28772