[INFO] crate bio-jtools 2020.6.11 is already in cache
[INFO] checking bio-jtools-2020.6.11 against try#c8bdaa84ec1b37f18f30375e196a65b7602f3790 for pr-73345
[INFO] extracting crate bio-jtools 2020.6.11 into /workspace/builds/worker-3/source
[INFO] validating manifest of crates.io crate bio-jtools 2020.6.11 on toolchain c8bdaa84ec1b37f18f30375e196a65b7602f3790
[INFO] running `"/workspace/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking crates.io crate bio-jtools 2020.6.11
[INFO] finished tweaking crates.io crate bio-jtools 2020.6.11
[INFO] tweaked toml for crates.io crate bio-jtools 2020.6.11 written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate crates.io crate bio-jtools 2020.6.11 already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rust-lapper v0.4.4
[INFO] [stderr]   Downloaded needletail v0.3.2
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+c8bdaa84ec1b37f18f30375e196a65b7602f3790" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 3f27487e6e1e71e1903b22df180bf4954cfa4d203bc0a766eaf43f6d3b2b63dc
[INFO] running `"docker" "start" "-a" "3f27487e6e1e71e1903b22df180bf4954cfa4d203bc0a766eaf43f6d3b2b63dc"`
[INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted
[INFO] [stderr]    Compiling proc-macro2 v1.0.8
[INFO] [stderr]    Compiling cc v1.0.50
[INFO] [stderr]    Compiling syn v1.0.14
[INFO] [stderr]    Compiling memchr v2.3.0
[INFO] [stderr]    Compiling serde v1.0.104
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling ryu v1.0.2
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling pkg-config v0.3.17
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking unicode-width v0.1.7
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling ndarray v0.13.0
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]    Compiling bio v0.30.0
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]     Checking bit-vec v0.5.1
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking strum v0.16.0
[INFO] [stderr]     Checking encode_unicode v0.3.6
[INFO] [stderr]     Checking safemem v0.3.3
[INFO] [stderr]     Checking yaml-rust v0.3.5
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking rust-lapper v0.4.4
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]     Checking miniz_oxide v0.3.6
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bv v0.11.0
[INFO] [stderr]     Checking bit-set v0.5.1
[INFO] [stderr]     Checking crc32fast v1.2.0
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]     Checking dirs v1.0.5
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking time v0.1.43
[INFO] [stderr]     Checking regex-automata v0.1.8
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking statrs v0.11.0
[INFO] [stderr]     Checking term v0.5.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking csv-core v0.1.6
[INFO] [stderr]     Checking aho-corasick v0.7.8
[INFO] [stderr]     Checking flate2 v1.0.13
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling backtrace-sys v0.1.32
[INFO] [stderr]    Compiling bzip2-sys v0.1.8+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]     Checking num-complex v0.2.4
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]     Checking xz2 v0.1.6
[INFO] [stderr]     Checking backtrace v0.3.43
[INFO] [stderr]     Checking bzip2 v0.3.3
[INFO] [stderr]     Checking chrono v0.4.11
[INFO] [stderr]     Checking needletail v0.3.2
[INFO] [stderr]    Compiling serde_derive v1.0.104
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]     Checking snafu v0.5.0
[INFO] [stderr]     Checking bstr v0.2.11
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking bio-types v0.5.1
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking clap v2.33.0
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking prettytable-rs v0.8.0
[INFO] [stderr]     Checking bio-jtools v2020.6.11 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused variable: `o`
[INFO] [stderr]    --> src/main.rs:174:24
[INFO] [stderr]     |
[INFO] [stderr] 174 |     } else if let Some(o) = _matches.subcommand_matches("kspec") {
[INFO] [stderr]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `o`
[INFO] [stderr]    --> src/main.rs:176:24
[INFO] [stderr]     |
[INFO] [stderr] 176 |     } else if let Some(o) = _matches.subcommand_matches("filter") {
[INFO] [stderr]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `seqtype`
[INFO] [stderr]    --> src/data/mod.rs:290:31
[INFO] [stderr]     |
[INFO] [stderr] 290 | pub fn organize(indir: &Path, seqtype: &str, dryrun: bool, verbose: bool) {
[INFO] [stderr]     |                               ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seqtype`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `o`
[INFO] [stderr]    --> src/main.rs:174:24
[INFO] [stderr]     |
[INFO] [stderr] 174 |     } else if let Some(o) = _matches.subcommand_matches("kspec") {
[INFO] [stderr]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `o`
[INFO] [stderr]    --> src/main.rs:176:24
[INFO] [stderr]     |
[INFO] [stderr] 176 |     } else if let Some(o) = _matches.subcommand_matches("filter") {
[INFO] [stderr]     |                        ^ help: if this is intentional, prefix it with an underscore: `_o`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `seqtype`
[INFO] [stderr]    --> src/data/mod.rs:290:31
[INFO] [stderr]     |
[INFO] [stderr] 290 | pub fn organize(indir: &Path, seqtype: &str, dryrun: bool, verbose: bool) {
[INFO] [stderr]     |                               ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seqtype`
[INFO] [stderr] 
[INFO] [stderr] warning: 3 warnings emitted
[INFO] [stderr] 
[INFO] [stderr] warning: 3 warnings emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 21s
[INFO] running `"docker" "inspect" "3f27487e6e1e71e1903b22df180bf4954cfa4d203bc0a766eaf43f6d3b2b63dc"`
[INFO] running `"docker" "rm" "-f" "3f27487e6e1e71e1903b22df180bf4954cfa4d203bc0a766eaf43f6d3b2b63dc"`
[INFO] [stdout] 3f27487e6e1e71e1903b22df180bf4954cfa4d203bc0a766eaf43f6d3b2b63dc