[INFO] crate seq_io 0.3.0 is already in cache [INFO] checking seq_io-0.3.0 against master#4fb54ed484e2239a3e9eff3be17df00d2a162be3 for pr-73345 [INFO] extracting crate seq_io 0.3.0 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate seq_io 0.3.0 on toolchain 4fb54ed484e2239a3e9eff3be17df00d2a162be3 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate seq_io 0.3.0 [INFO] finished tweaking crates.io crate seq_io 0.3.0 [INFO] tweaked toml for crates.io crate seq_io 0.3.0 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:6c9ffe128752d56c8d75334ed354142a5229917ed99767f56566dd8e857ad726" "/opt/rustwide/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] c3f0fe4ce44e167530dd7694b89c2fa5884de9436069f4de6cf462606a5d56cd [INFO] running `Command { std: "docker" "start" "-a" "c3f0fe4ce44e167530dd7694b89c2fa5884de9436069f4de6cf462606a5d56cd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c3f0fe4ce44e167530dd7694b89c2fa5884de9436069f4de6cf462606a5d56cd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c3f0fe4ce44e167530dd7694b89c2fa5884de9436069f4de6cf462606a5d56cd", kill_on_drop: false }` [INFO] [stdout] c3f0fe4ce44e167530dd7694b89c2fa5884de9436069f4de6cf462606a5d56cd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:6c9ffe128752d56c8d75334ed354142a5229917ed99767f56566dd8e857ad726" "/opt/rustwide/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 866ce91ef9260371e3551292e26b6a2b46391cf6b729b85346fbe2b690981bf4 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "866ce91ef9260371e3551292e26b6a2b46391cf6b729b85346fbe2b690981bf4", kill_on_drop: false }` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling syn v1.0.31 [INFO] [stderr] Compiling arrayvec v0.4.12 [INFO] [stderr] Checking scopeguard v0.3.3 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Checking stable_deref_trait v1.1.1 [INFO] [stderr] Checking memoffset v0.2.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling rayon-core v1.7.1 [INFO] [stderr] Checking crossbeam-utils v0.5.0 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling serde_json v1.0.55 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Checking ucd-util v0.1.8 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Checking utf8-ranges v1.0.4 [INFO] [stderr] Checking bit-vec v0.4.4 [INFO] [stderr] Checking safemem v0.2.0 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking lazy_static v0.2.11 [INFO] [stderr] Checking approx v0.1.1 [INFO] [stderr] Checking bytecount v0.3.2 [INFO] [stderr] Checking rand_core v0.3.1 [INFO] [stderr] Compiling lz4-sys v1.9.2 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Checking itertools v0.6.5 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking crossbeam-utils v0.6.6 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking thread_local v0.3.6 [INFO] [stderr] Checking owning_ref v0.4.1 [INFO] [stderr] Checking regex-syntax v0.5.6 [INFO] [stderr] Checking bit-set v0.4.0 [INFO] [stderr] Checking walkdir v2.3.1 [INFO] [stderr] Checking crc32fast v1.2.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking rand_xoshiro v0.1.0 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking aho-corasick v0.6.10 [INFO] [stderr] Compiling parking_lot_core v0.3.1 [INFO] [stderr] Compiling cast v0.2.3 [INFO] [stderr] Checking rand v0.5.6 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking slice-deque v0.1.16 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking clap v2.33.1 [INFO] [stderr] Checking lock_api v0.1.5 [INFO] [stderr] Checking regex v1.3.9 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.4 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling rayon v1.3.1 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking rand v0.3.23 [INFO] [stderr] Checking buf_redux v0.7.1 [INFO] [stderr] Checking flate2 v1.0.14 [INFO] [stderr] Checking crossbeam-epoch v0.6.1 [INFO] [stderr] Checking crossbeam-epoch v0.5.2 [INFO] [stderr] Checking statrs v0.9.0 [INFO] [stderr] Checking crossbeam-deque v0.5.2 [INFO] [stderr] Checking crossbeam-queue v0.2.3 [INFO] [stderr] Checking parking_lot v0.6.4 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking crossbeam-channel v0.2.6 [INFO] [stderr] Checking num-traits v0.1.43 [INFO] [stderr] Checking num-complex v0.1.43 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking crossbeam v0.4.1 [INFO] [stderr] Checking ordered-float v0.5.2 [INFO] [stderr] Compiling serde_derive v1.0.112 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Checking serde v1.0.112 [INFO] [stderr] Checking lz4 v1.23.2 [INFO] [stderr] Checking fastq v0.6.0 [INFO] [stderr] Checking bstr v0.2.13 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking bio-types v0.6.0 [INFO] [stderr] Checking seq_io v0.3.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/fastq.rs:721:32 [INFO] [stdout] | [INFO] [stdout] 721 | fn cause(&self) -> Option<&StdError> { [INFO] [stdout] | ^^^^^^^^ help: use `dyn`: `dyn StdError` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stdout] --> src/fasta.rs:609:35 [INFO] [stdout] | [INFO] [stdout] 609 | Error::Io(ref e) => e.description(), [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stdout] --> src/fastq.rs:712:35 [INFO] [stdout] | [INFO] [stdout] 712 | Error::Io(ref e) => e.description(), [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking criterion v0.2.11 [INFO] [stderr] Checking bio v0.22.0 [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/fastq.rs:721:32 [INFO] [stdout] | [INFO] [stdout] 721 | fn cause(&self) -> Option<&StdError> { [INFO] [stdout] | ^^^^^^^^ help: use `dyn`: `dyn StdError` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused doc comment [INFO] [stdout] --> benches/fastq.rs:68:1 [INFO] [stdout] | [INFO] [stdout] 68 | /// data to be used with parallel readers that require 'static [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ rustdoc does not generate documentation for macro invocations [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_doc_comments)]` on by default [INFO] [stdout] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary braces around block return value [INFO] [stdout] --> benches/fastq.rs:70:32 [INFO] [stdout] | [INFO] [stdout] 70 | static ref L500: Vec = { with_seqlen(N, 500, false, false) }; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these braces [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_braces)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stdout] --> src/fasta.rs:609:35 [INFO] [stdout] | [INFO] [stdout] 609 | Error::Io(ref e) => e.description(), [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated item 'std::error::Error::description': use the Display impl or to_string() [INFO] [stdout] --> src/fastq.rs:712:35 [INFO] [stdout] | [INFO] [stdout] 712 | Error::Io(ref e) => e.description(), [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 18s [INFO] running `Command { std: "docker" "inspect" "866ce91ef9260371e3551292e26b6a2b46391cf6b729b85346fbe2b690981bf4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "866ce91ef9260371e3551292e26b6a2b46391cf6b729b85346fbe2b690981bf4", kill_on_drop: false }` [INFO] [stdout] 866ce91ef9260371e3551292e26b6a2b46391cf6b729b85346fbe2b690981bf4