[INFO] crate libhdf5-sys 0.2.0 is already in cache [INFO] checking libhdf5-sys-0.2.0 against master#4fb54ed484e2239a3e9eff3be17df00d2a162be3 for pr-73345 [INFO] extracting crate libhdf5-sys 0.2.0 into /workspace/builds/worker-7/source [INFO] validating manifest of crates.io crate libhdf5-sys 0.2.0 on toolchain 4fb54ed484e2239a3e9eff3be17df00d2a162be3 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate libhdf5-sys 0.2.0 [INFO] removed path dependency libhdf5-lib from crates.io crate libhdf5-sys 0.2.0 [INFO] removed path dependency libhdf5-lib from crates.io crate libhdf5-sys 0.2.0 [INFO] finished tweaking crates.io crate libhdf5-sys 0.2.0 [INFO] tweaked toml for crates.io crate libhdf5-sys 0.2.0 written to /workspace/builds/worker-7/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:6c9ffe128752d56c8d75334ed354142a5229917ed99767f56566dd8e857ad726" "/opt/rustwide/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0f5388ef02e3689dc80da90f51f332aae51be786c6c77f3ae954bbdea86d6bd5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "0f5388ef02e3689dc80da90f51f332aae51be786c6c77f3ae954bbdea86d6bd5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0f5388ef02e3689dc80da90f51f332aae51be786c6c77f3ae954bbdea86d6bd5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0f5388ef02e3689dc80da90f51f332aae51be786c6c77f3ae954bbdea86d6bd5", kill_on_drop: false }` [INFO] [stdout] 0f5388ef02e3689dc80da90f51f332aae51be786c6c77f3ae954bbdea86d6bd5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:6c9ffe128752d56c8d75334ed354142a5229917ed99767f56566dd8e857ad726" "/opt/rustwide/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] bf23f1553cc1bd7f8170c89d5de9b0ba94e48ef2eb023a4f402be0eead22ce01 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "bf23f1553cc1bd7f8170c89d5de9b0ba94e48ef2eb023a4f402be0eead22ce01", kill_on_drop: false }` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling libhdf5-lib v0.2.0 [INFO] [stderr] Compiling libhdf5-sys v0.2.0 (/opt/rustwide/workdir) [INFO] [stdout] error: linking with `cc` failed: exit code: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-L" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/libhdf5-sys-204b65bea451dbd0/build_script_build-204b65bea451dbd0.build_script_build.4zlq6s5k-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-204b65bea451dbd0/build_script_build-204b65bea451dbd0.build_script_build.4zlq6s5k-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-204b65bea451dbd0/build_script_build-204b65bea451dbd0.build_script_build.4zlq6s5k-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-204b65bea451dbd0/build_script_build-204b65bea451dbd0.build_script_build.4zlq6s5k-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-204b65bea451dbd0/build_script_build-204b65bea451dbd0.build_script_build.4zlq6s5k-cgu.4.rcgu.o" "-o" "/opt/rustwide/target/debug/build/libhdf5-sys-204b65bea451dbd0/build_script_build-204b65bea451dbd0" "/opt/rustwide/target/debug/build/libhdf5-sys-204b65bea451dbd0/build_script_build-204b65bea451dbd0.1wdd7p46zi9y3g25.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-495ae5a0c0b0070c.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-0df9faf88e74ed3b.rlib" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-f9e6a5fb2e2e8cbc.rlib" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-05b3477ba39b37d9.rlib" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-fd43f1008ae3de7b.rlib" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace-c69fd8a874cc6882.rlib" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/libbacktrace_sys-4f9ba7dc6471f5d2.rlib" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-a3adee158d70a602.rlib" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-36aa33d5b51fea85.rlib" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-8ffb67928670fecf.rlib" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-95ea48ddc44a311b.rlib" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-4f5122dbbdcc70ab.rlib" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-68f423c59dc48a40.rlib" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-54580c7798bf2225.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/4fb54ed484e2239a3e9eff3be17df00d2a162be3/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-e805fea8b8005cb4.rlib" "-Wl,-Bdynamic" "-lhdf5" "-ldl" "-lrt" "-lpthread" "-lgcc_s" "-lc" "-lm" "-lrt" "-lpthread" "-lutil" "-ldl" "-lutil" [INFO] [stdout] = note: /usr/bin/ld: cannot find -lhdf5 [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `libhdf5-sys`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] running `Command { std: "docker" "inspect" "bf23f1553cc1bd7f8170c89d5de9b0ba94e48ef2eb023a4f402be0eead22ce01", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bf23f1553cc1bd7f8170c89d5de9b0ba94e48ef2eb023a4f402be0eead22ce01", kill_on_drop: false }` [INFO] [stdout] bf23f1553cc1bd7f8170c89d5de9b0ba94e48ef2eb023a4f402be0eead22ce01