[INFO] crate hdf5 0.6.1 is already in cache [INFO] checking hdf5-0.6.1 against master#4fb54ed484e2239a3e9eff3be17df00d2a162be3 for pr-73345 [INFO] extracting crate hdf5 0.6.1 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate hdf5 0.6.1 on toolchain 4fb54ed484e2239a3e9eff3be17df00d2a162be3 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.6.1 [INFO] finished tweaking crates.io crate hdf5 0.6.1 [INFO] tweaked toml for crates.io crate hdf5 0.6.1 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:6c9ffe128752d56c8d75334ed354142a5229917ed99767f56566dd8e857ad726" "/opt/rustwide/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] cb8e4f9e719be209110c29e686d6d13e44132eab9a29a669cd944838516715cc [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cb8e4f9e719be209110c29e686d6d13e44132eab9a29a669cd944838516715cc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "cb8e4f9e719be209110c29e686d6d13e44132eab9a29a669cd944838516715cc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cb8e4f9e719be209110c29e686d6d13e44132eab9a29a669cd944838516715cc", kill_on_drop: false }` [INFO] [stdout] cb8e4f9e719be209110c29e686d6d13e44132eab9a29a669cd944838516715cc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:6c9ffe128752d56c8d75334ed354142a5229917ed99767f56566dd8e857ad726" "/opt/rustwide/cargo-home/bin/cargo" "+4fb54ed484e2239a3e9eff3be17df00d2a162be3" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8aefb125a3768a2a426fe7eb813a5d4997413734b5164c91aeca51b5c50f4521 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8aefb125a3768a2a426fe7eb813a5d4997413734b5164c91aeca51b5c50f4521", kill_on_drop: false }` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling proc-macro-hack-impl v0.4.2 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking smallvec v1.3.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking remove_dir_all v0.5.2 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling proc-macro2 v1.0.10 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling proc-macro-hack v0.4.2 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking parking_lot_core v0.7.1 [INFO] [stderr] Checking hdf5-types v0.6.1 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking mashup v0.1.9 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking regex v1.3.6 [INFO] [stderr] Compiling hdf5-sys v0.6.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-ce4ce24e3d73578e/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55bda8bedd35 - backtrace::backtrace::libunwind::trace::hc3f32ba24d88242a [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55bda8bedd35 - backtrace::backtrace::trace_unsynchronized::haad2590418eb4c26 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55bda8bedd35 - std::sys_common::backtrace::_print_fmt::h4397782fec59f199 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55bda8bedd35 - ::fmt::h39652f0242246c81 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55bda8c118fc - core::fmt::write::h540ac4a6a1232abc [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x55bda8beaab3 - std::io::Write::write_fmt::haa03b5883ee9e297 [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x55bda8bf0320 - std::sys_common::backtrace::_print::ha6d9bdf9f438acec [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55bda8bf0320 - std::sys_common::backtrace::print::ha1fba17a8e5f6bc7 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55bda8bf0320 - std::panicking::default_hook::{{closure}}::ha3c41e6964bb5c0e [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55bda8bf006c - std::panicking::default_hook::h39b8550780094336 [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x55bda8bf0957 - std::panicking::rust_panic_with_hook::hc8b48ce48004c103 [INFO] [stderr] at src/libstd/panicking.rs:477 [INFO] [stderr] 11: 0x55bda89fbcd9 - std::panicking::begin_panic::h7b47b2493dd80482 [INFO] [stderr] at /rustc/4fb54ed484e2239a3e9eff3be17df00d2a162be3/src/libstd/panicking.rs:404 [INFO] [stderr] 12: 0x55bda89cc54c - build_script_build::LibrarySearcher::try_locate_hdf5_library::h93dfd5a093ef02a5 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523 [INFO] [stderr] 13: 0x55bda89cd8fc - build_script_build::main::hcf673a6067165372 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:601 [INFO] [stderr] 14: 0x55bda89d78eb - std::rt::lang_start::{{closure}}::hdada6429668f8ce3 [INFO] [stderr] at /rustc/4fb54ed484e2239a3e9eff3be17df00d2a162be3/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x55bda8bf0d28 - std::rt::lang_start_internal::{{closure}}::h980666b660b57c6b [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x55bda8bf0d28 - std::panicking::try::do_call::h350bf2b82f81cf24 [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 17: 0x55bda8bf0d28 - std::panicking::try::hcafd728f614c0cb2 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 18: 0x55bda8bf0d28 - std::panic::catch_unwind::h301dc6a83a38a171 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x55bda8bf0d28 - std::rt::lang_start_internal::hf4abd869024c3270 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x55bda89d78c7 - std::rt::lang_start::hb829ff32e03bb313 [INFO] [stderr] at /rustc/4fb54ed484e2239a3e9eff3be17df00d2a162be3/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x55bda89ce3aa - main [INFO] [stderr] 22: 0x7fc8289380b3 - __libc_start_main [INFO] [stderr] 23: 0x55bda89c819e - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "8aefb125a3768a2a426fe7eb813a5d4997413734b5164c91aeca51b5c50f4521", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8aefb125a3768a2a426fe7eb813a5d4997413734b5164c91aeca51b5c50f4521", kill_on_drop: false }` [INFO] [stdout] 8aefb125a3768a2a426fe7eb813a5d4997413734b5164c91aeca51b5c50f4521