[INFO] crate flann 0.1.0 is already in cache [INFO] checking flann-0.1.0 against master#8ac1525e091d3db28e67adcbbd6db1e1deaa37fb for pr-73323 [INFO] extracting crate flann 0.1.0 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate flann 0.1.0 on toolchain 8ac1525e091d3db28e67adcbbd6db1e1deaa37fb [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8ac1525e091d3db28e67adcbbd6db1e1deaa37fb" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann 0.1.0 [INFO] finished tweaking crates.io crate flann 0.1.0 [INFO] tweaked toml for crates.io crate flann 0.1.0 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8ac1525e091d3db28e67adcbbd6db1e1deaa37fb" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8ac1525e091d3db28e67adcbbd6db1e1deaa37fb" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8ac1525e091d3db28e67adcbbd6db1e1deaa37fb" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 5816e68aede31ce90ca525c517ab76c3e90a252588bed3a7e84c60c696535c5c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5816e68aede31ce90ca525c517ab76c3e90a252588bed3a7e84c60c696535c5c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5816e68aede31ce90ca525c517ab76c3e90a252588bed3a7e84c60c696535c5c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5816e68aede31ce90ca525c517ab76c3e90a252588bed3a7e84c60c696535c5c", kill_on_drop: false }` [INFO] [stdout] 5816e68aede31ce90ca525c517ab76c3e90a252588bed3a7e84c60c696535c5c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+8ac1525e091d3db28e67adcbbd6db1e1deaa37fb" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4662d9a92b1a653256e7428b6a2736d0b904644322b0ae1ae48c390b6374f5f3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "4662d9a92b1a653256e7428b6a2736d0b904644322b0ae1ae48c390b6374f5f3", kill_on_drop: false }` [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling proc-macro2 v1.0.18 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.33 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Checking gimli v0.22.0 [INFO] [stderr] Checking adler v0.2.2 [INFO] [stderr] Checking object v0.20.0 [INFO] [stderr] Checking rustc-demangle v0.1.16 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Checking assert_approx_eq v1.1.0 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Checking miniz_oxide v0.4.0 [INFO] [stderr] Compiling libc v0.2.72 [INFO] [stderr] Compiling log v0.4.8 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Checking addr2line v0.13.0 [INFO] [stderr] Checking backtrace v0.3.50 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Compiling flann-sys v0.1.0 [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-7c4c90c36702ef8a/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-b6e22923f29b5c37/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-b6e22923f29b5c37/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-b6e22923f29b5c37/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x560a85b8c695 - backtrace::backtrace::libunwind::trace::h34afbfad7fd770fc [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x560a85b8c695 - backtrace::backtrace::trace_unsynchronized::h460d522b1619a600 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x560a85b8c695 - std::sys_common::backtrace::_print_fmt::ha45fac10086813b4 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x560a85b8c695 - ::fmt::hde84f63fcfd0e6de [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x560a85bb75ac - core::fmt::write::h540ac4a6a1232abc [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x560a85b887a2 - std::io::Write::write_fmt::hc344eafd6e850b4d [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x560a85b8f3b0 - std::sys_common::backtrace::_print::h4db88ff15cb5d61d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x560a85b8f3b0 - std::sys_common::backtrace::print::h5fc39e1b1f610bd3 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x560a85b8f3b0 - std::panicking::default_hook::{{closure}}::h59e55edacb1d974a [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x560a85b8f0fc - std::panicking::default_hook::heee4c8016dfbf328 [INFO] [stderr] at src/libstd/panicking.rs:217 [INFO] [stderr] 10: 0x560a85b8f9f3 - std::panicking::rust_panic_with_hook::h8405b6301c79fb5a [INFO] [stderr] at src/libstd/panicking.rs:526 [INFO] [stderr] 11: 0x560a85b8f5eb - rust_begin_unwind [INFO] [stderr] at src/libstd/panicking.rs:437 [INFO] [stderr] 12: 0x560a85b8f55b - std::panicking::begin_panic_fmt::h0ed87aa3b2c392e6 [INFO] [stderr] at src/libstd/panicking.rs:391 [INFO] [stderr] 13: 0x560a8565f497 - cmake::fail::h2a0c5af080957399 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885 [INFO] [stderr] 14: 0x560a8565edde - cmake::run::h8738cbbc233dfe27 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863 [INFO] [stderr] 15: 0x560a8565a797 - cmake::Config::build::hf7bee1387fd91376 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:698 [INFO] [stderr] 16: 0x560a856554e6 - build_script_build::main::h69a35e072e3f8301 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/build.rs:30 [INFO] [stderr] 17: 0x560a8565790b - std::rt::lang_start::{{closure}}::h4575ce45139fd941 [INFO] [stderr] at /rustc/8ac1525e091d3db28e67adcbbd6db1e1deaa37fb/src/libstd/rt.rs:67 [INFO] [stderr] 18: 0x560a85b8fdc3 - std::rt::lang_start_internal::{{closure}}::h7cea099ad4edf1eb [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 19: 0x560a85b8fdc3 - std::panicking::try::do_call::h42d93372c44025d2 [INFO] [stderr] at src/libstd/panicking.rs:348 [INFO] [stderr] 20: 0x560a85b8fdc3 - std::panicking::try::hb47a4182362d3341 [INFO] [stderr] at src/libstd/panicking.rs:325 [INFO] [stderr] 21: 0x560a85b8fdc3 - std::panic::catch_unwind::h2afcfbf3125915b4 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 22: 0x560a85b8fdc3 - std::rt::lang_start_internal::h4f696727fe904f48 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 23: 0x560a856578e7 - std::rt::lang_start::h917b31ecc158c79e [INFO] [stderr] at /rustc/8ac1525e091d3db28e67adcbbd6db1e1deaa37fb/src/libstd/rt.rs:67 [INFO] [stderr] 24: 0x560a856558ea - main [INFO] [stderr] 25: 0x7ffa4f0590b3 - __libc_start_main [INFO] [stderr] 26: 0x560a8565519e - _start [INFO] [stderr] 27: 0x0 - [INFO] running `Command { std: "docker" "inspect" "4662d9a92b1a653256e7428b6a2736d0b904644322b0ae1ae48c390b6374f5f3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4662d9a92b1a653256e7428b6a2736d0b904644322b0ae1ae48c390b6374f5f3", kill_on_drop: false }` [INFO] [stdout] 4662d9a92b1a653256e7428b6a2736d0b904644322b0ae1ae48c390b6374f5f3