[INFO] crate neuro 0.1.0 is already in cache [INFO] checking neuro-0.1.0 against master#1557fb031b272b4c5bfcc7de5df7eddc7b36a584 for pr-73166 [INFO] extracting crate neuro 0.1.0 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate neuro 0.1.0 on toolchain 1557fb031b272b4c5bfcc7de5df7eddc7b36a584 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1557fb031b272b4c5bfcc7de5df7eddc7b36a584" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate neuro 0.1.0 [INFO] finished tweaking crates.io crate neuro 0.1.0 [INFO] tweaked toml for crates.io crate neuro 0.1.0 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate crates.io crate neuro 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1557fb031b272b4c5bfcc7de5df7eddc7b36a584" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+1557fb031b272b4c5bfcc7de5df7eddc7b36a584" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] e40c17cb764ca675e8d18226c9428cd11dd2a2280c4b680a7f46d6e0925318e8 [INFO] running `Command { std: "docker" "start" "-a" "e40c17cb764ca675e8d18226c9428cd11dd2a2280c4b680a7f46d6e0925318e8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e40c17cb764ca675e8d18226c9428cd11dd2a2280c4b680a7f46d6e0925318e8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e40c17cb764ca675e8d18226c9428cd11dd2a2280c4b680a7f46d6e0925318e8", kill_on_drop: false }` [INFO] [stdout] e40c17cb764ca675e8d18226c9428cd11dd2a2280c4b680a7f46d6e0925318e8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:d9fbb4e2287ab3795bdefaf705efb7541a8875c13bce71e067d6b01dc5ed759b" "/opt/rustwide/cargo-home/bin/cargo" "+1557fb031b272b4c5bfcc7de5df7eddc7b36a584" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4d0f3941d57e5ca9f0be98bdf6a3832a0e9ca21c80c8d27b9711a502b1965631 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "4d0f3941d57e5ca9f0be98bdf6a3832a0e9ca21c80c8d27b9711a502b1965631", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling cc v1.0.50 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling regex-syntax v0.6.14 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Checking adler32 v1.0.4 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling rayon-core v1.7.0 [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Checking lzw v0.10.0 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Checking color_quant v1.0.1 [INFO] [stderr] Checking ascii v0.9.3 [INFO] [stderr] Checking unicode-width v0.1.7 [INFO] [stderr] Checking bytemuck v1.2.0 [INFO] [stderr] Checking number_prefix v0.3.0 [INFO] [stderr] Checking scoped_threadpool v0.1.9 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Checking rand_jitter v0.1.4 [INFO] [stderr] Checking lock_api v0.2.0 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking miniz_oxide v0.3.6 [INFO] [stderr] Checking inflate v0.4.5 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Checking rand_xorshift v0.1.1 [INFO] [stderr] Checking rand_hc v0.1.0 [INFO] [stderr] Checking rand_isaac v0.1.1 [INFO] [stderr] Checking walkdir v2.3.1 [INFO] [stderr] Checking gif v0.10.3 [INFO] [stderr] Compiling aho-corasick v0.7.9 [INFO] [stderr] Checking regex-automata v0.1.8 [INFO] [stderr] Checking deflate v0.7.20 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-bigint v0.2.6 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Compiling num-rational v0.2.3 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Checking smallvec v0.6.13 [INFO] [stderr] Checking tiff v0.4.0 [INFO] [stderr] Checking bstr v0.2.11 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Checking num_cpus v1.12.0 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking termios v0.3.1 [INFO] [stderr] Checking clicolors-control v1.0.1 [INFO] [stderr] Checking hdf5-types v0.6.0 [INFO] [stderr] Checking png v0.15.3 [INFO] [stderr] Checking regex v1.3.4 [INFO] [stderr] Compiling memoffset v0.5.3 [INFO] [stderr] Compiling parking_lot_core v0.5.0 [INFO] [stderr] Compiling parking_lot v0.8.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Checking crossbeam-queue v0.2.1 [INFO] [stderr] Checking rand_chacha v0.2.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking console v0.9.2 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking indicatif v0.14.0 [INFO] [stderr] Compiling hdf5-sys v0.6.0 [INFO] [stderr] Checking num v0.2.1 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling hdf5-derive v0.6.0 [INFO] [stderr] Compiling serde_json v1.0.48 [INFO] [stderr] Checking jpeg-decoder v0.1.18 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-57fe4c1d69ac2da2/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x565467fe17d5 - backtrace::backtrace::libunwind::trace::h34afbfad7fd770fc [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x565467fe17d5 - backtrace::backtrace::trace_unsynchronized::h460d522b1619a600 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x565467fe17d5 - std::sys_common::backtrace::_print_fmt::ha45fac10086813b4 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x565467fe17d5 - ::fmt::hde84f63fcfd0e6de [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x56546800533c - core::fmt::write::h540ac4a6a1232abc [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x565467fde553 - std::io::Write::write_fmt::hc344eafd6e850b4d [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x565467fe3dc0 - std::sys_common::backtrace::_print::h4db88ff15cb5d61d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x565467fe3dc0 - std::sys_common::backtrace::print::h5fc39e1b1f610bd3 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x565467fe3dc0 - std::panicking::default_hook::{{closure}}::h59e55edacb1d974a [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x565467fe3b0c - std::panicking::default_hook::heee4c8016dfbf328 [INFO] [stderr] at src/libstd/panicking.rs:217 [INFO] [stderr] 10: 0x565467fe43f7 - std::panicking::rust_panic_with_hook::h8405b6301c79fb5a [INFO] [stderr] at src/libstd/panicking.rs:473 [INFO] [stderr] 11: 0x565467dfd0b9 - std::panicking::begin_panic::h9d4bbadda9e23985 [INFO] [stderr] at /rustc/1557fb031b272b4c5bfcc7de5df7eddc7b36a584/src/libstd/panicking.rs:403 [INFO] [stderr] 12: 0x565467dc058c - build_script_build::LibrarySearcher::try_locate_hdf5_library::h75092e8dd2648a74 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527 [INFO] [stderr] 13: 0x565467dc193c - build_script_build::main::hd1437c6bd5199cac [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:605 [INFO] [stderr] 14: 0x565467dcb59b - std::rt::lang_start::{{closure}}::hce386ee186c0ec10 [INFO] [stderr] at /rustc/1557fb031b272b4c5bfcc7de5df7eddc7b36a584/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x565467fe47c8 - std::rt::lang_start_internal::{{closure}}::h7cea099ad4edf1eb [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x565467fe47c8 - std::panicking::try::do_call::h42d93372c44025d2 [INFO] [stderr] at src/libstd/panicking.rs:296 [INFO] [stderr] 17: 0x565467fe47c8 - std::panicking::try::hb47a4182362d3341 [INFO] [stderr] at src/libstd/panicking.rs:273 [INFO] [stderr] 18: 0x565467fe47c8 - std::panic::catch_unwind::h2afcfbf3125915b4 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x565467fe47c8 - std::rt::lang_start_internal::h4f696727fe904f48 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x565467dcb577 - std::rt::lang_start::hc0f2ab4649b8bb5d [INFO] [stderr] at /rustc/1557fb031b272b4c5bfcc7de5df7eddc7b36a584/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x565467dc246a - main [INFO] [stderr] 22: 0x7f9ec547e0b3 - __libc_start_main [INFO] [stderr] 23: 0x565467dbc1ae - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "4d0f3941d57e5ca9f0be98bdf6a3832a0e9ca21c80c8d27b9711a502b1965631", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4d0f3941d57e5ca9f0be98bdf6a3832a0e9ca21c80c8d27b9711a502b1965631", kill_on_drop: false }` [INFO] [stdout] 4d0f3941d57e5ca9f0be98bdf6a3832a0e9ca21c80c8d27b9711a502b1965631