[INFO] crate hdf5 0.6.1 is already in cache [INFO] checking hdf5-0.6.1 against master#1557fb031b272b4c5bfcc7de5df7eddc7b36a584 for pr-73166 [INFO] extracting crate hdf5 0.6.1 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate hdf5 0.6.1 on toolchain 1557fb031b272b4c5bfcc7de5df7eddc7b36a584 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1557fb031b272b4c5bfcc7de5df7eddc7b36a584" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.6.1 [INFO] finished tweaking crates.io crate hdf5 0.6.1 [INFO] tweaked toml for crates.io crate hdf5 0.6.1 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1557fb031b272b4c5bfcc7de5df7eddc7b36a584" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1557fb031b272b4c5bfcc7de5df7eddc7b36a584" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 547a50e438f67ec208426f6fed51c57680928c56b06f9b7ca550d0db9327db50 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "547a50e438f67ec208426f6fed51c57680928c56b06f9b7ca550d0db9327db50", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "547a50e438f67ec208426f6fed51c57680928c56b06f9b7ca550d0db9327db50", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "547a50e438f67ec208426f6fed51c57680928c56b06f9b7ca550d0db9327db50", kill_on_drop: false }` [INFO] [stdout] 547a50e438f67ec208426f6fed51c57680928c56b06f9b7ca550d0db9327db50 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env@sha256:a636fd89d022f18117e1dc8fb37a0a009933cdbbe082814857f0e2024962d47c" "/opt/rustwide/cargo-home/bin/cargo" "+1557fb031b272b4c5bfcc7de5df7eddc7b36a584" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] ccfb2289c2a3ed2a61c3ce455b8d3bcaee7f90f63f29099082c900997a7d7f9d [INFO] running `Command { std: "docker" "start" "-a" "ccfb2289c2a3ed2a61c3ce455b8d3bcaee7f90f63f29099082c900997a7d7f9d", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling proc-macro2 v1.0.10 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling proc-macro-hack-impl v0.4.2 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Checking smallvec v1.3.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking ppv-lite86 v0.2.6 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking remove_dir_all v0.5.2 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking parking_lot_core v0.7.1 [INFO] [stderr] Checking hdf5-types v0.6.1 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Compiling proc-macro-hack v0.4.2 [INFO] [stderr] Checking aho-corasick v0.7.10 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Checking mashup v0.1.9 [INFO] [stderr] Compiling regex v1.3.6 [INFO] [stderr] Compiling hdf5-sys v0.6.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-ce4ce24e3d73578e/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55c4d2adee15 - backtrace::backtrace::libunwind::trace::h34afbfad7fd770fc [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55c4d2adee15 - backtrace::backtrace::trace_unsynchronized::h460d522b1619a600 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55c4d2adee15 - std::sys_common::backtrace::_print_fmt::ha45fac10086813b4 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55c4d2adee15 - ::fmt::hde84f63fcfd0e6de [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55c4d2b029dc - core::fmt::write::h540ac4a6a1232abc [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x55c4d2adbb93 - std::io::Write::write_fmt::hc344eafd6e850b4d [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x55c4d2ae1400 - std::sys_common::backtrace::_print::h4db88ff15cb5d61d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55c4d2ae1400 - std::sys_common::backtrace::print::h5fc39e1b1f610bd3 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55c4d2ae1400 - std::panicking::default_hook::{{closure}}::h59e55edacb1d974a [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55c4d2ae114c - std::panicking::default_hook::heee4c8016dfbf328 [INFO] [stderr] at src/libstd/panicking.rs:217 [INFO] [stderr] 10: 0x55c4d2ae1a37 - std::panicking::rust_panic_with_hook::h8405b6301c79fb5a [INFO] [stderr] at src/libstd/panicking.rs:473 [INFO] [stderr] 11: 0x55c4d28eccc9 - std::panicking::begin_panic::ha5550eafdb38fe33 [INFO] [stderr] at /rustc/1557fb031b272b4c5bfcc7de5df7eddc7b36a584/src/libstd/panicking.rs:403 [INFO] [stderr] 12: 0x55c4d28bd54c - build_script_build::LibrarySearcher::try_locate_hdf5_library::h93dfd5a093ef02a5 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523 [INFO] [stderr] 13: 0x55c4d28be8fc - build_script_build::main::hcf673a6067165372 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:601 [INFO] [stderr] 14: 0x55c4d28c8ccb - std::rt::lang_start::{{closure}}::h809e3fcef916c77d [INFO] [stderr] at /rustc/1557fb031b272b4c5bfcc7de5df7eddc7b36a584/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x55c4d2ae1e08 - std::rt::lang_start_internal::{{closure}}::h7cea099ad4edf1eb [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x55c4d2ae1e08 - std::panicking::try::do_call::h42d93372c44025d2 [INFO] [stderr] at src/libstd/panicking.rs:296 [INFO] [stderr] 17: 0x55c4d2ae1e08 - std::panicking::try::hb47a4182362d3341 [INFO] [stderr] at src/libstd/panicking.rs:273 [INFO] [stderr] 18: 0x55c4d2ae1e08 - std::panic::catch_unwind::h2afcfbf3125915b4 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x55c4d2ae1e08 - std::rt::lang_start_internal::h4f696727fe904f48 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x55c4d28c8ca7 - std::rt::lang_start::h0b12f08dc3a646bd [INFO] [stderr] at /rustc/1557fb031b272b4c5bfcc7de5df7eddc7b36a584/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x55c4d28bf3aa - main [INFO] [stderr] 22: 0x7efe0913f0b3 - __libc_start_main [INFO] [stderr] 23: 0x55c4d28b919e - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "ccfb2289c2a3ed2a61c3ce455b8d3bcaee7f90f63f29099082c900997a7d7f9d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ccfb2289c2a3ed2a61c3ce455b8d3bcaee7f90f63f29099082c900997a7d7f9d", kill_on_drop: false }` [INFO] [stdout] ccfb2289c2a3ed2a61c3ce455b8d3bcaee7f90f63f29099082c900997a7d7f9d