[INFO] crate hdf5 0.6.1 is already in cache [INFO] checking hdf5-0.6.1 against master#f9fdf642bab2bfcabe1829a4c82aaf055330661b for pr-73102 [INFO] extracting crate hdf5 0.6.1 into /workspace/builds/worker-11/source [INFO] validating manifest of crates.io crate hdf5 0.6.1 on toolchain f9fdf642bab2bfcabe1829a4c82aaf055330661b [INFO] running `"/workspace/cargo-home/bin/cargo" "+f9fdf642bab2bfcabe1829a4c82aaf055330661b" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate hdf5 0.6.1 [INFO] finished tweaking crates.io crate hdf5 0.6.1 [INFO] tweaked toml for crates.io crate hdf5 0.6.1 written to /workspace/builds/worker-11/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+f9fdf642bab2bfcabe1829a4c82aaf055330661b" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+f9fdf642bab2bfcabe1829a4c82aaf055330661b" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] a87bbd9de3d753bc214b787615dffbb3d6ca1ae98573b6055751f19a6edca6a2 [INFO] running `"docker" "start" "-a" "a87bbd9de3d753bc214b787615dffbb3d6ca1ae98573b6055751f19a6edca6a2"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Checking smallvec v1.3.0 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking ppv-lite86 v0.2.6 [INFO] [stderr] Checking remove_dir_all v0.5.2 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Compiling proc-macro2 v1.0.10 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Checking aho-corasick v0.7.10 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Checking parking_lot_core v0.7.1 [INFO] [stderr] Checking hdf5-types v0.6.1 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking regex v1.3.6 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking mashup v0.1.9 [INFO] [stderr] Compiling hdf5-sys v0.6.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-58093195aaec90d3/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55995386f755 - backtrace::backtrace::libunwind::trace::haa412c68ebbfb7cb [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55995386f755 - backtrace::backtrace::trace_unsynchronized::ha108e3f35b74f2c0 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55995386f755 - std::sys_common::backtrace::_print_fmt::h15e024020a5efe76 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55995386f755 - ::fmt::h0f0ee68588fafa16 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55995389331c - core::fmt::write::h5e8e27a0c5da998b [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x55995386c5b3 - std::io::Write::write_fmt::h40a97a3850da46f1 [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x559953871d40 - std::sys_common::backtrace::_print::h1951082d2778220a [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x559953871d40 - std::sys_common::backtrace::print::hb28523ad63a39f3d [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x559953871d40 - std::panicking::default_hook::{{closure}}::h335019dd84826d63 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x559953871a8c - std::panicking::default_hook::h075f202ae1b09cd1 [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x559953872377 - std::panicking::rust_panic_with_hook::hd172f806c3cae9b4 [INFO] [stderr] at src/libstd/panicking.rs:477 [INFO] [stderr] 11: 0x55995378b629 - std::panicking::begin_panic::h8fdb92798a78bc38 [INFO] [stderr] at /rustc/f9fdf642bab2bfcabe1829a4c82aaf055330661b/src/libstd/panicking.rs:404 [INFO] [stderr] 12: 0x55995364e52c - build_script_build::LibrarySearcher::try_locate_hdf5_library::h60a2c73e5bd5307b [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:523 [INFO] [stderr] 13: 0x55995364f8dc - build_script_build::main::h5bd6c7638e8d1337 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.1/build.rs:601 [INFO] [stderr] 14: 0x559953659aeb - std::rt::lang_start::{{closure}}::h0213d1668e13f709 [INFO] [stderr] at /rustc/f9fdf642bab2bfcabe1829a4c82aaf055330661b/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x559953872748 - std::rt::lang_start_internal::{{closure}}::h2864321e935738e7 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x559953872748 - std::panicking::try::do_call::h333ff4828746b918 [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 17: 0x559953872748 - std::panicking::try::h8e774ead4eea5983 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 18: 0x559953872748 - std::panic::catch_unwind::h16076fe2b012afda [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x559953872748 - std::rt::lang_start_internal::hbf7659429e6237e7 [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x559953659ac7 - std::rt::lang_start::hb89390dd7754302f [INFO] [stderr] at /rustc/f9fdf642bab2bfcabe1829a4c82aaf055330661b/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x55995365038a - main [INFO] [stderr] 22: 0x7f65dfb8b0b3 - __libc_start_main [INFO] [stderr] 23: 0x55995364a19e - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "a87bbd9de3d753bc214b787615dffbb3d6ca1ae98573b6055751f19a6edca6a2"` [INFO] running `"docker" "rm" "-f" "a87bbd9de3d753bc214b787615dffbb3d6ca1ae98573b6055751f19a6edca6a2"` [INFO] [stdout] a87bbd9de3d753bc214b787615dffbb3d6ca1ae98573b6055751f19a6edca6a2