[INFO] fetching crate hdf5-sys 0.6.1... [INFO] checking hdf5-sys-0.6.1 against try#4662032ab74cd44d423120d08d251dfead4914a0 for pr-72788 [INFO] extracting crate hdf5-sys 0.6.1 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate hdf5-sys 0.6.1 on toolchain 4662032ab74cd44d423120d08d251dfead4914a0 [INFO] running `"/workspace/cargo-home/bin/cargo" "+4662032ab74cd44d423120d08d251dfead4914a0" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate hdf5-sys 0.6.1 [INFO] finished tweaking crates.io crate hdf5-sys 0.6.1 [INFO] tweaked toml for crates.io crate hdf5-sys 0.6.1 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+4662032ab74cd44d423120d08d251dfead4914a0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/workspace/cargo-home/bin/cargo" "+4662032ab74cd44d423120d08d251dfead4914a0" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+4662032ab74cd44d423120d08d251dfead4914a0" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] f09f28a98e1652511a14b34b9c661fa6288366d83398fd4156eef0ed67f0cd9d [INFO] running `"docker" "start" "-a" "f09f28a98e1652511a14b34b9c661fa6288366d83398fd4156eef0ed67f0cd9d"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libloading v0.6.2 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling hdf5-sys v0.6.1 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-1bfcb579052644af/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', build.rs:523:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x555d063a4d85 - backtrace::backtrace::libunwind::trace::h508d2c55eb856ef2 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x555d063a4d85 - backtrace::backtrace::trace_unsynchronized::h31c9d8a0097b92f8 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x555d063a4d85 - std::sys_common::backtrace::_print_fmt::h520f528c4c103a3f [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x555d063a4d85 - ::fmt::hf4dec5da8360bccb [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x555d063c88cc - core::fmt::write::hdf236390fbd68d3d [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x555d063a1c03 - std::io::Write::write_fmt::hd33447f61d92a88a [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x555d063a7370 - std::sys_common::backtrace::_print::h856c809943c588ab [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x555d063a7370 - std::sys_common::backtrace::print::hc042b4237cc3648a [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x555d063a7370 - std::panicking::default_hook::{{closure}}::h35997132c163f935 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x555d063a70bc - std::panicking::default_hook::h8555bf398b0f1318 [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x555d063a79a7 - std::panicking::rust_panic_with_hook::h9b80e82887819c44 [INFO] [stderr] at src/libstd/panicking.rs:486 [INFO] [stderr] 11: 0x555d062c24cb - std::panicking::begin_panic::hd0038e7a6a2cd867 [INFO] [stderr] at /rustc/4662032ab74cd44d423120d08d251dfead4914a0/src/libstd/panicking.rs:410 [INFO] [stderr] 12: 0x555d061863fb - build_script_build::LibrarySearcher::try_locate_hdf5_library::hdfe9ad841ea824d9 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:523 [INFO] [stderr] 13: 0x555d0618776b - build_script_build::main::h6a5e454c027a5537 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:601 [INFO] [stderr] 14: 0x555d0619172b - std::rt::lang_start::{{closure}}::h5c4cc92ed7c1f887 [INFO] [stderr] at /rustc/4662032ab74cd44d423120d08d251dfead4914a0/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x555d063a7d78 - std::rt::lang_start_internal::{{closure}}::h4c8bd631e3dc2cb9 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x555d063a7d78 - std::panicking::try::do_call::h88ce8513ed0d613c [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 17: 0x555d063a7d78 - std::panicking::try::he181ad9c483671e2 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 18: 0x555d063a7d78 - std::panic::catch_unwind::heb113c382f4c732f [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x555d063a7d78 - std::rt::lang_start_internal::h807304d390ed60ab [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x555d06191707 - std::rt::lang_start::ha3495270438788d7 [INFO] [stderr] at /rustc/4662032ab74cd44d423120d08d251dfead4914a0/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x555d0618821a - main [INFO] [stderr] 22: 0x7f3725bcc0b3 - __libc_start_main [INFO] [stderr] 23: 0x555d0618219e - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "f09f28a98e1652511a14b34b9c661fa6288366d83398fd4156eef0ed67f0cd9d"` [INFO] running `"docker" "rm" "-f" "f09f28a98e1652511a14b34b9c661fa6288366d83398fd4156eef0ed67f0cd9d"` [INFO] [stdout] f09f28a98e1652511a14b34b9c661fa6288366d83398fd4156eef0ed67f0cd9d