[INFO] crate neuro 0.1.0 is already in cache [INFO] checking neuro-0.1.0 against master#74e80468347471779be6060d8d7d6d04e98e467f for pr-72788 [INFO] extracting crate neuro 0.1.0 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate neuro 0.1.0 on toolchain 74e80468347471779be6060d8d7d6d04e98e467f [INFO] running `"/workspace/cargo-home/bin/cargo" "+74e80468347471779be6060d8d7d6d04e98e467f" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate neuro 0.1.0 [INFO] finished tweaking crates.io crate neuro 0.1.0 [INFO] tweaked toml for crates.io crate neuro 0.1.0 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate crates.io crate neuro 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `"/workspace/cargo-home/bin/cargo" "+74e80468347471779be6060d8d7d6d04e98e467f" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+74e80468347471779be6060d8d7d6d04e98e467f" "check" "--frozen" "--all" "--all-targets"` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] cbe5b62e36712bb3a3ead44f0bde637e14241de1349e2d6179b033b23bfb6af1 [INFO] running `"docker" "start" "-a" "cbe5b62e36712bb3a3ead44f0bde637e14241de1349e2d6179b033b23bfb6af1"` [INFO] [stderr] sudo: setrlimit(RLIMIT_CORE): Operation not permitted [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling regex-syntax v0.6.14 [INFO] [stderr] Checking adler32 v1.0.4 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Checking unicode-width v0.1.7 [INFO] [stderr] Checking ascii v0.9.3 [INFO] [stderr] Checking number_prefix v0.3.0 [INFO] [stderr] Checking bytemuck v1.2.0 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-bigint v0.2.6 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Compiling num-rational v0.2.3 [INFO] [stderr] Checking rand_core v0.3.1 [INFO] [stderr] Checking lock_api v0.2.0 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking inflate v0.4.5 [INFO] [stderr] Checking miniz_oxide v0.3.6 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Checking walkdir v2.3.1 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Checking rand_hc v0.1.0 [INFO] [stderr] Checking rand_isaac v0.1.1 [INFO] [stderr] Checking rand_xorshift v0.1.1 [INFO] [stderr] Checking rand_chacha v0.1.1 [INFO] [stderr] Compiling serde_json v1.0.48 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Checking smallvec v0.6.13 [INFO] [stderr] Checking aho-corasick v0.7.9 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Checking crossbeam-queue v0.2.1 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Checking deflate v0.7.20 [INFO] [stderr] Checking regex-automata v0.1.8 [INFO] [stderr] Checking tiff v0.4.0 [INFO] [stderr] Compiling memoffset v0.5.3 [INFO] [stderr] Compiling parking_lot_core v0.5.0 [INFO] [stderr] Compiling parking_lot v0.8.0 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking num_cpus v1.12.0 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking termios v0.3.1 [INFO] [stderr] Checking clicolors-control v1.0.1 [INFO] [stderr] Checking hdf5-types v0.6.0 [INFO] [stderr] Checking ndarray v0.12.1 [INFO] [stderr] Checking bstr v0.2.11 [INFO] [stderr] Checking rand v0.6.5 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking png v0.15.3 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking rand_chacha v0.2.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking rayon-core v1.7.0 [INFO] [stderr] Checking regex v1.3.4 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking num v0.2.1 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking console v0.9.2 [INFO] [stderr] Checking indicatif v0.14.0 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling hdf5-derive v0.6.0 [INFO] [stderr] Compiling hdf5-sys v0.6.0 [INFO] [stderr] Checking jpeg-decoder v0.1.18 [INFO] [stderr] Checking image v0.23.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-9b7236c470f38ad5/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55e4635a0495 - backtrace::backtrace::libunwind::trace::h508d2c55eb856ef2 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/libunwind.rs:86 [INFO] [stderr] 1: 0x55e4635a0495 - backtrace::backtrace::trace_unsynchronized::h31c9d8a0097b92f8 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.46/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x55e4635a0495 - std::sys_common::backtrace::_print_fmt::h520f528c4c103a3f [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:78 [INFO] [stderr] 3: 0x55e4635a0495 - ::fmt::hf4dec5da8360bccb [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:59 [INFO] [stderr] 4: 0x55e4635c3f7c - core::fmt::write::hdf236390fbd68d3d [INFO] [stderr] at src/libcore/fmt/mod.rs:1076 [INFO] [stderr] 5: 0x55e46359d313 - std::io::Write::write_fmt::hd33447f61d92a88a [INFO] [stderr] at src/libstd/io/mod.rs:1537 [INFO] [stderr] 6: 0x55e4635a2a80 - std::sys_common::backtrace::_print::h856c809943c588ab [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:62 [INFO] [stderr] 7: 0x55e4635a2a80 - std::sys_common::backtrace::print::hc042b4237cc3648a [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:49 [INFO] [stderr] 8: 0x55e4635a2a80 - std::panicking::default_hook::{{closure}}::h35997132c163f935 [INFO] [stderr] at src/libstd/panicking.rs:198 [INFO] [stderr] 9: 0x55e4635a27cc - std::panicking::default_hook::h8555bf398b0f1318 [INFO] [stderr] at src/libstd/panicking.rs:218 [INFO] [stderr] 10: 0x55e4635a30b7 - std::panicking::rust_panic_with_hook::h9b80e82887819c44 [INFO] [stderr] at src/libstd/panicking.rs:486 [INFO] [stderr] 11: 0x55e4634bf8bb - std::panicking::begin_panic::hdb2fd5337ca4cf30 [INFO] [stderr] at /rustc/74e80468347471779be6060d8d7d6d04e98e467f/src/libstd/panicking.rs:410 [INFO] [stderr] 12: 0x55e46338341b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h07d5c83e2b655c47 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527 [INFO] [stderr] 13: 0x55e46338478b - build_script_build::main::h4faa8ac29b6dc090 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:605 [INFO] [stderr] 14: 0x55e46338e85b - std::rt::lang_start::{{closure}}::h10891df2ff993cb6 [INFO] [stderr] at /rustc/74e80468347471779be6060d8d7d6d04e98e467f/src/libstd/rt.rs:67 [INFO] [stderr] 15: 0x55e4635a3488 - std::rt::lang_start_internal::{{closure}}::h4c8bd631e3dc2cb9 [INFO] [stderr] at src/libstd/rt.rs:52 [INFO] [stderr] 16: 0x55e4635a3488 - std::panicking::try::do_call::h88ce8513ed0d613c [INFO] [stderr] at src/libstd/panicking.rs:297 [INFO] [stderr] 17: 0x55e4635a3488 - std::panicking::try::he181ad9c483671e2 [INFO] [stderr] at src/libstd/panicking.rs:274 [INFO] [stderr] 18: 0x55e4635a3488 - std::panic::catch_unwind::heb113c382f4c732f [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 19: 0x55e4635a3488 - std::rt::lang_start_internal::h807304d390ed60ab [INFO] [stderr] at src/libstd/rt.rs:51 [INFO] [stderr] 20: 0x55e46338e837 - std::rt::lang_start::h64e730f46dcc2176 [INFO] [stderr] at /rustc/74e80468347471779be6060d8d7d6d04e98e467f/src/libstd/rt.rs:67 [INFO] [stderr] 21: 0x55e4633852ba - main [INFO] [stderr] 22: 0x7fdfc14830b3 - __libc_start_main [INFO] [stderr] 23: 0x55e46337f1ae - _start [INFO] [stderr] 24: 0x0 - [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "cbe5b62e36712bb3a3ead44f0bde637e14241de1349e2d6179b033b23bfb6af1"` [INFO] running `"docker" "rm" "-f" "cbe5b62e36712bb3a3ead44f0bde637e14241de1349e2d6179b033b23bfb6af1"` [INFO] [stdout] cbe5b62e36712bb3a3ead44f0bde637e14241de1349e2d6179b033b23bfb6af1